New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4025138 =	53 (0.620)	3 (0.040)	3/340	NT	5.8%	coding (561/1194 nt)	emrA	multidrug efflux transport system ‑ membrane fusion protein
	?	AE015451	4025175 =	47 (0.570)					coding (524/1194 nt)	emrA	multidrug efflux transport system ‑ membrane fusion protein

GCACGCAGCGTGCGGCAGGTGCGCGGGCTTTACAGCAACGTCGACTCGCTGAAGGCTCAACTGGAAACGCGCCAAGCCGAACTGCGCAAGGCGCAACAGGACTTCAACCGGCGCAAGGTGCTGGCTGACAGCGGTGCGATTGCCGCAGAAGAACTGTCCCACGCCCGTGACGACCTGAGCGTTGCCCAGGCTGCCGTCAACAGCGCGCGGCAACAGCTCAGCACCAGCAGCGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4025374‑4025138 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgctgTTGACGGCAGCCTGGGCAACGCTCAGGTCGTCACGGGCGTGGGACAGTTCTTCTGCGGCAATCGCACCGCTGTCAGCCAGCACCTTGCGCCGGTTGAAGTCCTGTTGCGCCTTGCGCAGTTCGGCTTGGCGCGTTTCCAGTTGAGCCTTCAGCGAGTCGACGTTGCTGTAAAGCCCGCGCACCTGCCGCACGCTGCGTGCCAGCTTGGCTTCGGCGGACTGCAAGGCCACTTCG  >  AE015451/4025175‑4025408                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCACGCAGCGTGCGGCAGGTGCGCGGGCTTTACAGCAACGTCGACTCGCTGAAGGCTCAACTGGAAACGCGCCAAGCCGAACTGCGCAAGGCGCAACAGGACTTCAACCGGCGCAAGGTGCTGGCTGACAGCGGTGCGATTGCCGCAGAAGAACTGTCCCACGCCCGTGACGACCTGAGCGTTGCCCAGGCTGCCGTCAACAGCGCGCGGCAACAGCTCAGCACCAGCAGCGCGC                                                                                                                                                                                                                                              <  1:904556/235‑1   ACGCAGCGTGCGGCAGGTGCGCGGGCTTTACAGCAACGTCGACTCGCTGAAGGCTCAACTGGAAACGCGCCAAGCCGAACTGCGCAAGGCGCAACAGGACTTCAACCGGCGCAAGGTGCTGGCTGACAGCGGTGCGATTGCCGCAGAAGAACTGTCCCACGCCCGTGACGACCTGAGCGTTGCCCAGGCTGCCGTCAACAGCGCGCGGCAACAGCTCAGCACCAGCAGCGCGCTG                                                                                                                                                                                                                                            <  1:1257370/235‑1         CGTGCGGCAGGTGCGCGGGCTTTACAGCAACGTCGACTCGCTGAAGGCTCAACTGGAAACGCGCCAAGCCGAACTGCGCAAGGCGCAACAGGACTTCAACCGGCGCAAGGTGCTGGCTGACAGCGGTGCGATTGCCGCAGAAGAACTGTCCCACGCCCGTGACGACCTGAGCGTTGCCCAGGCTGCCGTCAACAGCGCGCGGCAACAGCTCAGCACCAGCAGC                                                                                                                                                                                                                                                  <  1:1292615/223‑1                                           GACTCGCTGAAGGCTCAACTGGAAACGCGCCAAGCCGAACTGCGCAAGGCGCAACAGGACTTCAACCGGCGCAAGGTGCTGGCTGACAGCGGTGCGATTGCCGCAGAAGAACTGTCCCACGCCCGTGACGACCTGAGCGTTGCCCAGGCTGCCGTCAACAGCGCGCGGCAACAGCTCAGCACCAGCAGCGCGCTGTTGAC                                                                                                                                                                                                                                       <  1:45671/200‑1                                              TCGCTGAAGGCTCAACTGGAAACGCGCCAAGCCGAACTGCGCAAGGCGCAACAGGACTTCAACCGGCGCAAGGTGCTGGCTGACAGCGGTGCGATTGCCGCAGAAGAACTGTCCCACGCCCGTGACGACCTGAGCGTTGCCCAGGCTGCCGTCAACAGCGCGCGGCAACAGCTCAGCACCAGCAGCGCGC                                                                                                                                                                                                                                              <  2:243471/190‑1                                                                                                                                         ctATTGCCGCAGAAGACCTGTCCCACGCCCGTGACGACCTGAGCGTTGCCCAGGCTGCCGTCAACAGCGCGCGGCAACAGCTCAGCACCAGCAGCGCGCTGTTGACGGCAGCCTGGGCAACGCTCAGGTCGTCACGGGCGTGGGACAGTTCTTCTGCGGCAATCGCACCGCTGTCAG                                                                                                                                                                <  1:382239/175‑1                                                                                                                                                                                  AGCGTTGCCCAGGCTGCCGTCAACAGCGCGCGGCAACAGCTCAGCACCAGCAGCGCGCTGTTGACGGCAGCCTGGGCAACGCTCAGGTCGT                                                                                                                                                                                                             <  2:526031/91‑1                                                                                                                                                                                                              CGCGGCAACAGCTCAGCACCAGCAGCGCGCTGTTGACGGCAGCCTGGGCAACGCTCAGGTCGTCACGGGCGTGGGACAGTTCT                                                                                                                                                                                         <  2:63825/83‑1                                                                                                                                                                                                                                         CGCTGTTGACGGCAGCCTGGGCAACGCTCAGGTCGTCACGGGCGTGGGACAGTTCTTCTGCGGCAATCGCACCGCTGTCAGCCAGCACCTTGCGCCGGTTGAAGTCCTGTTGCGCCTTGCGCAGTTCGGCTTGGCGCGTTTCCAGTTGAGCCTTCAGCGAGTCGACGTTGCTGTAAAGCCCGCGCACCTGCCGCACGCTGCGTGCCAGCTTGGCTTCGGCGGACTGCAAGGCCACT     >  1:81329/1‑236                                                                                                                                                                                                                                           CTGTTGACGGCAGCCTGGGCAACGCTCAGGTCGTCACGGGCGTGGGACAGTTCTTCTGCGGCAATCGCACCGCTGTCAGCCAGCACCTTGCGCCGGTTGAAGTCCTGTTGCGCCTTGCGCAGTTCGGCTTGGCGCGTTTCCAGTTGAGCCTTCAGCGAGTCGACGTTGCTGTAAAGCCCGCGCACCTGCCGCACGCTGCGTGCCAGCTTGGCTTCGGCGGAC                 <  2:1071984/222‑1                                                                                                                                                                                                                                            TGTTGACGGCAGCCTGGGCAACGCTCAGGTCGTCACGGGCGTGGGACAGTTCTTCTGCGGCAATCGCACCGCTGTCAGCCAGCACCTTGCGCCGGTTGAAGTCCTGTTGCGCCTTGCGCAGTTCGGCTTGGCGCGTTTCCAGTTGAGCCTTCAGCGAGTCGACGTTGCTGTAAAGCCCGCGCACCTGCCGCACGCTGCGTGCCAGCTTGGCTTCGGCGGACTGCAAGGCCACTTCG  >  1:641269/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCACGCAGCGTGCGGCAGGTGCGCGGGCTTTACAGCAACGTCGACTCGCTGAAGGCTCAACTGGAAACGCGCCAAGCCGAACTGCGCAAGGCGCAACAGGACTTCAACCGGCGCAAGGTGCTGGCTGACAGCGGTGCGATTGCCGCAGAAGAACTGTCCCACGCCCGTGACGACCTGAGCGTTGCCCAGGCTGCCGTCAACAGCGCGCGGCAACAGCTCAGCACCAGCAGCGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4025374‑4025138 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgctgTTGACGGCAGCCTGGGCAACGCTCAGGTCGTCACGGGCGTGGGACAGTTCTTCTGCGGCAATCGCACCGCTGTCAGCCAGCACCTTGCGCCGGTTGAAGTCCTGTTGCGCCTTGCGCAGTTCGGCTTGGCGCGTTTCCAGTTGAGCCTTCAGCGAGTCGACGTTGCTGTAAAGCCCGCGCACCTGCCGCACGCTGCGTGCCAGCTTGGCTTCGGCGGACTGCAAGGCCACTTCG  >  AE015451/4025175‑4025408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.