| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 4640986 | 72 (0.840) | 5 (0.060) | 5/332 | NT | 6.4% | coding (817/1383 nt) | gabP‑IV | gamma‑aminobutyrate permease |
| ? | AE015451 | = 4641002 | 79 (0.990) | coding (801/1383 nt) | gabP‑IV | gamma‑aminobutyrate permease | |||||
CGAAGCAGCCAGCGAAGCCCGCCAGGGTGGAGAAGATCACTGCCACGGTCGGCACGCCGGAACCGGAGATGCGCTTGGTCACGCTCAGCGCCTGACCACGCGCGCCCAGCGAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4640746‑4640986‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaacgacccCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTGCATGAACTCGGGGCTCTACACGGCGTCGCGCATGCTCTATTCGCTGGGCGCGCGTGGTCAGGCGCTGAGCGTGACCAAGCGCATCTCCGGTTCCGGCGTGCCGACCGTGGCAGTGATCTTCTCCACC < AE015451/4641002‑4640771 CGAAGCAGCCAGCGAAGCCCGCCAGGGTGGAGAAGATCACTGCCACGGTCGGCACGCCGGAACCGGAGATGCGCTTGGTCACGCTCAGCGCCTGACCACGCGCGCCCAGCGAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAA < 1:1297766/235‑1CGAAGCAGCCAGCGAAGCCCGCCAGGGTGGAGAAGATCACTGCCACGGTCGGCACGCCGGAACCGGAGATGCGCTTGGTCACGCTCAGCGCCTGACCACGCGCGCCCAGCGAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGA < 2:913431/234‑1 CAGGGTGGAGAAGATCACTGCCACGGTCGGCACGCCGGAACCGGAGATGCGCTTGGTCACGCTCAGCGCCTGACCACGCGCGCCCAGCGAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCCGGGCTCAAAGCGGTA < 1:637963/235‑1 CCGGAACCGGAGATGCGCTTGGTCACGCTCAGCGCCTGACCACGCGCGCCCAGCGAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACC < 1:1455204/184‑1 CCGGAACCGGAGATGCGCTTGGTCACGCTCAGCGCCTGACCACGCGCGCCCAGCGAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACC > 2:1455201/1‑184 GTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGGCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTGCATGAACTCGGGGC > 1:892109/1‑215 ACCGCCACCAGCACCACCAGGACAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTCCACGCTGGACCGACCCCGGG > 2:1154460/1‑84 AGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTG < 1:801327/158‑1 AGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTG > 2:801325/1‑158 CACTTCCAGTACACGCTGGAACGACCCCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTGCATGAACTCGGGGCTCTACACGGCGTCGCGCATGCTCTATTCGCTGGGCGCGCGTGGTCAGGCGCTGAGC > 1:421658/1‑202 GAACGACCCCGGGCTCAAAGCGGTAGGGCCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTGCATGAACTCGGGGCTCTACACGGCGTCGCGC < 2:894536/145‑1 AACGACCCCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTGCATGAACTCGGGGCTCTACACGGCGgc > 2:386640/1‑138 GACCCCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTGCATGAACTCGGGGCTCTACACGGCGTCGCGCATGCTCTATTCGCTGGGCGCGCGTGGTCAGGCGCTGAGCGTGACCAAGCGCATCTCCGGTTCCGGCGTGCCGACC > 2:978209/1‑216 ACCCCGGGCGCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTGCATGAACTCGGGGCTCTACACGGCGTCGCGCATGCTCTATTCGCTGGGCGCGCGTGGTCAGGCGCTGAGCGTGACCAAGCGCATCTCCGGTTCCGGCGTGCCGACCGTGGCAGTGATCTTCTCCACC < 1:340843/236‑1 CGAAGCAGCCAGCGAAGCCCGCCAGGGTGGAGAAGATCACTGCCACGGTCGGCACGCCGGAACCGGAGATGCGCTTGGTCACGCTCAGCGCCTGACCACGCGCGCCCAGCGAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4640746‑4640986‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaacgacccCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTGCATGAACTCGGGGCTCTACACGGCGTCGCGCATGCTCTATTCGCTGGGCGCGCGTGGTCAGGCGCTGAGCGTGACCAAGCGCATCTCCGGTTCCGGCGTGCCGACCGTGGCAGTGATCTTCTCCACC < AE015451/4641002‑4640771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |