New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5541845	76 (0.880)	5 (0.060)	5/336	NT	7.0%	coding (854/1398 nt)	dnaB	replicative DNA helicase (ATPase)
	?	AE015451	= 5542201	61 (0.750)					coding (498/1398 nt)	dnaB	replicative DNA helicase (ATPase)

TTTGGCCAGGGCCTTGAGCGAGCGGGAAATCTCGGAAATTTCGTTGGTACGGTTGTCACCGGCCGACCCCGGAATCTGCATCAGCTGCAGGTAGTCGACCATGATCATGGCGATTTCGCCATGCTCACGGGCCAGGCGGCGGGTACGCGCGCGCATTTCCGAGGGGCTGATACCCGCCGTATCGTCGATGAACAATTTTCGGTCGTTGAGCAGGTTCACTGCCGAGGTCAGGCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5541607‑5541845 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgcggccTAAAACCGGCGGCCCGGTGGGCGTCAACGAGCTGTTGACCATGGCCATCGACCGCATCGATACGCTGTTCAACTCCGACAGTGACATCACCGGTATCTCCACCGGTTACACCGACCTGGACGAGAAGACCAGCGGGCTGCAGGCAGCCGACCTGA  <  AE015451/5542201‑5542047                                                                                                                                                                                                                                                                                                                                                                                                            TTTGGCCAGGGCCTTGAGCGAGCGGGAAATCTCGGAAATTTCGTTGGTACGGTTGTCACCGGCCGACCCCGGAATCTGCATCAGCTGCAGGTAGTCGACCATGATCATGGCGATTTCGCCATGCTCACGGGCCAGGCGGCGGGTACGCGCGCGCATTTCCGAGGGGCTGATACCCGCCGTATCGTCGATGAACAATTTTCGGTCGTTGAGCAGGTTCACTGCCGAGGTCAGGCGCG                                                                                                                                                                >  1:913591/1‑236                                                                  ACCCCGGAATCTGCATCAGCTGCAGGTAGTCGACCATGATCATGGCGATTTCGCCATGCTCACGGGCCAGGCGGCGGGTACGCGCGCGCATTTCCGAGGGGCTGATACCCGCCGTATCGTCGATGAACAATTTTCGGTCGTTGAGCAGGTTCACTGCCGAGGTCAGGCGCGGt                                                                                                                                                              >  1:568801/1‑172                                                                                                      TGATCATGGCGGTTTCGCCATGCTCACGGGCCAGGCGGCGGGTACGCGCGCGCATTTCCGAGGGGCTGATACCCGCCGTATCGTCGATGAACAATTTTCGGTCGTTGAGCAGGTTCACTGCCGAGGTCAGGCGCGGCCTAAAACCGGCGGCTCGGTGGGCGTCA                                                                                                                                   <  1:1437948/164‑1                                                                                                          CATGGCGATTTCGCCATGCTCACGGGCCAGGCGGCGGGTACGCGCGCGCATTTCCGAGGGGCTGATACCCGCCGTATCGTCGATGAACAATTTTCGGTCGTTGAGCAGGTTCACTGCCGAGGTCAGGCGC                                                                                                                                                                 <  2:506797/130‑1                                                                                                                                 GGGCCAGGCGGCGGGTACGCGCGCGCATTTCCGAGGGGCTGATACCCGCCGTATCGTCGATGAACAATTTTCGGTCGTTGAGCAGGTTCACTGCCGAGGTCAGGCGCGGCCTAAAACCGGCGGCCCGGTGGGCGTCAACGAGCTGTTGACCATGGCCATCGA                                                                                                          <  2:1454733/162‑1                                                                                                                                                                CGAGGGGCTGATACCCGCCGTATCGTCGATGAACAATTTTCGGTCGTTGAGCAGGTTCACTGCCGAGGTCAGGCGCGGCCTAAAACCGGCGGCCCGGTGGGCGTCAACGAGCTGTTGACCATGGCCATCGACCGCATCGATACGCTGTTCAACTCCGACAGTGACATCACCGGTATCTCCACCGGTTACACCGACCTGGACGAGAAGACCAGCGGGCTGCAGGCAGCCGACCTGA  <  1:1081122/235‑1                                                                                                                                                                            ACCCGCCGTATCGTCGATGAACAATTTTCGGTCGTTGAGCAGGTTCACTGCCGAGGTCAGGCGCGGCCTAAAACCGGCGGCCCGGTGGGCGTCAACGAGCTGTTGACCATGGCCATCGACCGCATCGATACGCTGTTCAACTCCGACAGTGACATCACCGGTATCTCCACCGGTTACACCGACCTGGACGAGAAGACCAGCGGG                     >  2:1081119/1‑204                                                                                                                                                                              CCGCCGTATCGTCGATGAACAATTTTCGGTCGTTGAGCAGGTTCACTGCCGAGGTCAGGCGCGGCCTAAAACC                                                                                                                                                      <  2:442672/73‑1                                                                                                                                                                                                                                          GCGGCCTCAAACCGGCGGCCCTGTGGGAGTCAACGAGCTGTTGACCATGGCCATCGACCGCATCGATACGC                                                                                            <  1:1139877/71‑1                                                                                                                                                                                                                                                                                                                                                                                                            TTTGGCCAGGGCCTTGAGCGAGCGGGAAATCTCGGAAATTTCGTTGGTACGGTTGTCACCGGCCGACCCCGGAATCTGCATCAGCTGCAGGTAGTCGACCATGATCATGGCGATTTCGCCATGCTCACGGGCCAGGCGGCGGGTACGCGCGCGCATTTCCGAGGGGCTGATACCCGCCGTATCGTCGATGAACAATTTTCGGTCGTTGAGCAGGTTCACTGCCGAGGTCAGGCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5541607‑5541845 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgcggccTAAAACCGGCGGCCCGGTGGGCGTCAACGAGCTGTTGACCATGGCCATCGACCGCATCGATACGCTGTTCAACTCCGACAGTGACATCACCGGTATCTCCACCGGTTACACCGACCTGGACGAGAAGACCAGCGGGCTGCAGGCAGCCGACCTGA  <  AE015451/5542201‑5542047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.