New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 5910238 = | 64 (0.740) | 6 (0.070) | 5/338 | NT | 8.6% | coding (513/1362 nt) | spuC‑II | polyamine:pyruvate transaminase |
? | AE015451 | 5910270 = | 66 (0.810) | coding (481/1362 nt) | spuC‑II | polyamine:pyruvate transaminase |
CAGACCGCTCACCCGCCTGCGCTCGAGCTGGCCAAGGCGATCACCGACGTGGCGCCGAAAGGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5910480‑5910238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatgcacCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGCGCCCAGTAGTGACGCACCATGCGCAGCACAGTGTCGTTGCCTTCGGAGCCGGAGCCGGTGAAGAACACATGGGTCATACCTTTCGGCGCCACGTCGGTGATCGCCTTGGCCAGCTCGAGCGCAGGCGGGTGAGCGGTCTGGAAGAACAGGTTGTAG > AE015451/5910270‑5910496 CAGACCGCTCACCCGCCTGCGCTCGAGCTGGCCAAGGCGATCACCGACGTGGCGCCGAAAGGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCG < 1:1236610/235‑1 GACCGCTCACCCGCCTGCGCTCGAGCTGGCCAAGGCGATCACCGACGTGGCGCCGAAAGGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCA > 1:990976/1‑236 ACCGCTCACCCGCCTGCGCTCGAGCTGGCCAAGGCGATCACCGACGTGGCGCCGAAAGGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCA < 2:890459/235‑1 CGCTCACCCGCCTGCGCTCGAGCTGGCCAAGGCGATCACCGACGTGGCGCCGAAAGGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATtc > 2:1056851/1‑234 AGCTGGCCAAGGCGATCACCGACGTGGCGCCGAAAGGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGC < 1:185183/212‑1 CCGACGTGGCGCCGAAAGGTATGACCCGTGTGTGCTTCGCCGGCGCCGGCTCCGAAGGCAACGACACTGTGCTGCGCAGGGTGCGTCACTACGGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCACCGG < 2:452612/203‑1 GGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGC < 2:620296/177‑1 GTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCG > 1:515828/1‑161 GTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCG < 2:515826/161‑1 ACTGGGGGCTGAAGGGCAAACCGCACAAGCAGACCGTCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCGGGGCGGGATGAGCGGCATGCACCGGCGAAGGTGGCGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCA < 1:1033196/179‑1 TGGCCGCTGAAGGGCAAGCCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCCCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCACCGGCGAAGGTGGAGCCGT < 2:1087299/126‑1 gcagCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCACCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGCGCCCAGTAGTGACGCACCAT < 1:124860/161‑1 CATCGACGGTTTCCAGGGCGCCACCTTCGCCGGTGCCTGCCTGGGCGGTATGAGCGGCATGCACCGGCGAAGGTGGAGCCGT < 2:1337501/82‑1 CCACCTTCGCCGGTGCCTGCCTGGGCGGTATGAGCGGCATGCACCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGCGCCCAGTA < 1:1240499/123‑1 CACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCACCGGCGAAGGTGGAGCCGTGGTAACCGGTGATGCGGCCGATGATGGCCTGCTTGTGCGGTTTGCCCGTCCGCGgc > 2:298022/1‑115 GGCATGCACCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGCGCCCAGTAGTGACGCACCATGCGCAGCACAGTGTCGTTGCCTTCGGAGCCGGAGCCGGTGAAGAACACATGGGTCATACCTTTCGGCGCCACGTCGGTGATCGCCTTGGCCAGCTCGAGCGCAGGCGGGTGAGCGGTCTGGAAGAACAGGTTGTAG > 1:957818/1‑236 GGCATGCACCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGCGCCCAGTAGTGACGCACCATGCGCAGCACAGTGTCGTTGCCTTCGGAGCCGGAGCCGGTGAAGAACACATGGGTCATACCTTTCGGCGCCACGTCGGTGATCGCCTTGGCCAGCTCGAGCGC > 2:1374772/1‑202 CACCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGCGCCCAGTAGTGACGCACCATGCGCAGCACAGTGTCGTTGCCTGCGGAGCCGGAGCCGGTGAAGAACACATGGGTCATACCTTTCGGCGCCACGTCGGTGATCGCCTTGGCCAGCTCGAGCGCAGGCGGGT < 2:374593/204‑1 CAGACCGCTCACCCGCCTGCGCTCGAGCTGGCCAAGGCGATCACCGACGTGGCGCCGAAAGGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5910480‑5910238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatgcacCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGCGCCCAGTAGTGACGCACCATGCGCAGCACAGTGTCGTTGCCTTCGGAGCCGGAGCCGGTGAAGAACACATGGGTCATACCTTTCGGCGCCACGTCGGTGATCGCCTTGGCCAGCTCGAGCGCAGGCGGGTGAGCGGTCTGGAAGAACAGGTTGTAG > AE015451/5910270‑5910496 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |