New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5920565	92 (1.070)	3 (0.040)	3/346	NT	3.3%	coding (1151/1674 nt)	PP_5190	Type II secretion system protein
	?	AE015451	= 5920579	84 (1.010)					coding (1165/1674 nt)	PP_5190	Type II secretion system protein
Rejected: Frequency below/above cutoff threshold.

CCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5920437‑5920565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtCCAGCGCGGGCTGCACCTGCAACTGGTTGAAGGCTGGCTCCAGGCGCTCGATCGGGTCTTCGATGGTGCACAGGTTGACCTGTGGTGTGGCCAGCAGTTTGAGGCTGGTGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAGGATGATGCCTTGGCGCTGACGAAGCAGGCGCTGCCATTGGGCCAGTTGCTGGCCGTGCAGGCCAAGGCGGTCGAAGCCC  <  AE015451/5920579‑5920347                                                                                                                                                                                                                                                                                                                                                                            CCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGT                                                                                                                                                                                                                                           >  2:1458646/1‑129                                                                            CACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTCCAGCGCGGGCTGCACCTGCAACTGGTTGAAGGCTGGCTCCAGGCGCTCGATCGGGTCTTCGATGGTGCACAGGTTGACCTGTGGGGTGGCCAGCAGTTTGAGGCTGGTGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAGGATGATGCCTT                                                                      >  1:476924/1‑219                                                                                    AAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTCCAGCGCGGGCTGCACCTGCAACTGGTTGAAGGCTGGCTCCAGGCGCTCGATCGGGTCTTCGATGGTGCACAGGTTGACCTGTGGTGTGGCCAGCAGTTTGAGGCTGGTGTACAGCGTGCT                                                                                                                  >  1:682760/1‑167                                                                                    AAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTCCAGCGCGGGCTGCACCTGCAACTGGTTGAAGGCTGGCTCCAGGCGCTCGATCGGGTCTTCGATGGTGCACAGGTTGACCTGTGGTGTGGCCAGCAGTTTGAGGCTGGTGTACAGCGTGCT                                                                                                                  <  2:682758/167‑1                                                                                                                                GTCCAGCGCGGGCTGCACCTGCAACTGGTTGAAGGCTGGCTCCAGGCGCTCGATCGGGTCTTCGATGGTGCACAGGTTGACCTGTGGTGTGGCCAGCAGTTTGAGGCTGGTGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAGGATGATGCCTTGGCGCTGACGAAGCAGGCGCTGCCATTGGGCCAGTTGCTGGCCGTGCAGGCCAAGGCGGTCGAAGCCC  <  1:1161268/235‑1                                                                                                                                                                                                                                                                                                                                                                            CCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5920437‑5920565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtCCAGCGCGGGCTGCACCTGCAACTGGTTGAAGGCTGGCTCCAGGCGCTCGATCGGGTCTTCGATGGTGCACAGGTTGACCTGTGGTGTGGCCAGCAGTTTGAGGCTGGTGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAGGATGATGCCTTGGCGCTGACGAAGCAGGCGCTGCCATTGGGCCAGTTGCTGGCCGTGCAGGCCAAGGCGGTCGAAGCCC  <  AE015451/5920579‑5920347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.