New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	11722 =	71 (1.030)	7 (0.110)	7/322	NT	10.3%	coding (620/1104 nt)	dnaN	DNA polymerase III subunit beta
	?	AE015451	11752 =	54 (0.830)					coding (650/1104 nt)	dnaN	DNA polymerase III subunit beta

TACTTTTCGTTGGAAAGAATCGCTGTACGGCTGAAGGCTTCACGCAGCGCCTGGCGGTCTCCGACGACCAGCTTGTCACCGCCTTTGGGCAGTACGCGCTCGTAGTCCGGGAATTTGCCGTCCACCAGCTTGGAGGTAAAGGTGAACTCACCAGTAGTGGCGCGGATGTGATGCTGGCCCAGCACGATGCTGACCATACCTTCAGGATCGGTCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/11938‑11722 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcagcaTCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGAAGCCTTCAGCCGTACAGCGATTCTTTCCAACGAAAAGTACCGCGGTATTCGCCTGCAGCTGGCAGCCGGTCAACTGAAGAT  >  AE015451/11752‑11980                                                                                                                                                                                                                                                                                                                                                                                                                                                                TACTGTTCGTTGGAAAGAATCGCTGTACGGCTGAAGGCTTCACGCAGCGCCTGGCGGTCTCCGACGACCAGCTTGTCACCGCCTTTGGGCAGTACGCGCTCGTAGTCCGGGAATTTGCCGTCCACCAGCTTGGAGGTAAAGGTGAACTCACCAGTAGTGGCGCGGATGTGATGCTGGCCCAGCACGATGCTGACCATACCTTCAGGATCGGTCAGCATCGTGCTGG                                                                                                                                                                                                                              <  1:1059390/226‑1       TCGTTGGAAAGAATCGCTGTACGGCTGAAGGCTTCACGCAGCGCCTGGCGGTCTCCGACGACCAGCTTGTCACCGCCTTTGGGCAGTACGCGCTCGTAGTCCGGGAATTTGCCGTCCACCAGCTTGGAGGTAAAGGTGAACTCACCAGTAGTGGCGCGGATGTGATGCTGGCCCAGCACGATGCTGACCATACCTTCAGGATCGGTCAGCATCGTGCTGGGCCAGCATCACATCCG                                                                                                                                                                                                              <  1:575745/236‑1                                                                                                                 ATTTGCCGTCCACCAGCTTGGAGGTAAAGGTGAACTCACCAGTAGTGGCGCGGATGTGATGCTGGCCCAGCACGATGCTGACCATACCTTCAGGATCGGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTAC                                                                                                                                                                                                     >  1:1229618/1‑139                                                                                                                 ATTTGCCGTCCACCAGCTTGGAGGTAAAGGTGAACTCACCAGTAGTGGCGCGGATGTGATGCTGGCCCAGCACGATGCTGACCATACCTTCAGGATCGGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTAC                                                                                                                                                                                                     <  2:1229615/139‑1                                                                                                                                                            AGTGGCGCGGATGTGATGCTGGCCCAGCACGATGCTGACCATCCCTTCAGGATCGGTCAGCATCGTGCTGGGCCAGCATCACATC                                                                                                                                                                                                                <  1:288278/85‑1                                                                                                                                                                                                           CAGGATCGGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCG                                                                                                                                          <  1:400161/108‑1                                                                                                                                                                                                           CAGGATCGGTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCG                                                                                                                                          >  2:400158/1‑108                                                                                                                                                                                                                  GGTCAGCATCGTGCTGGGCCAGAATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGAAGC                                                                                <  2:262490/159‑1                                                                                                                                                                                                                   GTCATCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAAGTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGA                                                                                   >  2:952637/1‑155                                                                                                                                                                                                                   GTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGAAGCCTTCAGCCGTACAGCGATTCTTTCCAACGAAAAGTACCGCGGTATTCGCCTGCAGCTGGCAGCCGGTCAACg        >  1:1146567/1‑229                                                                                                                                                                                                                   GTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGAAGCCTTCAGCCGTACAGCGATTCTTTCCAACGAAAAGTACCGCGGTATTCGCCTGCAGCTGGCAGCCGGTCAACTGAAGAT  >  1:735530/1‑236                                                                                                                                                                                                                   GTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGAAGCCTTCAGCCGTACAGCGATTCTTT                                                         <  1:781754/181‑1                                                                                                                                                                                                                   GTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGAAGCCTTCAGCCGTACAGCGATTCTTT                                                         >  2:781751/1‑181                                                                                                                                                                                                                   GTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGAC                                                                                                    >  1:782518/1‑138                                                                                                                                                                                                                   GTCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGAC                                                                                                    <  2:782515/138‑1                                                                                                                                                                                                                   GTCAGCATCGTGCTGGGCCAGCACCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGC                                                                                       <  2:308438/151‑1                                                                                                                                                                                                                    TCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGAAGCCTTCAGCCGTACAGCGATTCTTTCCAACGAAAAGTACCGCGGTATTCGCCTGCAGCTGGCAGCCGGTCAACTGAAG    >  2:795486/1‑233                                                                                                                                                                                                                    TCAGCATCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTC                                                                                                          >  2:178836/1‑131                                                                                                                                                                                                                                                                                                                                                                                                                                                                TACTTTTCGTTGGAAAGAATCGCTGTACGGCTGAAGGCTTCACGCAGCGCCTGGCGGTCTCCGACGACCAGCTTGTCACCGCCTTTGGGCAGTACGCGCTCGTAGTCCGGGAATTTGCCGTCCACCAGCTTGGAGGTAAAGGTGAACTCACCAGTAGTGGCGCGGATGTGATGCTGGCCCAGCACGATGCTGACCATACCTTCAGGATCGGTCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/11938‑11722 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcagcaTCGTGCTGGGCCAGCATCACATCCGCGCCACTACTGGTGAGTTCACCTTTACCTCCAAGCTGGTGGACGGCAAATTCCCGGACTACGAGCGCGTACTGCCCAAAGGCGGTGACAAGCTGGTCGTCGGAGACCGCCAGGCGCTGCGTGAAGCCTTCAGCCGTACAGCGATTCTTTCCAACGAAAAGTACCGCGGTATTCGCCTGCAGCTGGCAGCCGGTCAACTGAAGAT  >  AE015451/11752‑11980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.