New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1424647 =	63 (0.920)	5 (0.080)	5/322	NT	8.3%	coding (720/768 nt)	PP_1248	Transporter, LysE family
	?	AE015451	1424687 =	51 (0.780)					coding (680/768 nt)	PP_1248	Transporter, LysE family

TGCGCCAGACCATGATGATCACCCTGCTCAACCCCAAGGCGATCATGTTCTACATGGCGTTTTTCCCGCTGTTCGTCGACCCGGTGAAGCACCAAGGGCTGGTGACGTTCGGTTTCATGGCGGCGACAGTGGCGGTGGTGACCTTCCTGTATGGGCTGATTGCCGTGGTGCTGACCCATCAACTGGCCGAGCGCATGCGCGCCAGCCCGCGAATTGCCAATATGTTCGAGCGGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1424885‑1424647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggcgCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATC  >  AE015451/1424687‑1424728                                                                                                                                                                                                                                                                                           TGCGCCAGACCATGATGATCACCCTGCTCAACCCCAAGGCGATCATGTTCTACATGGCGTTTTTCCCGCTGTTCGTCGACCCGGTGAAGCACCAAGGGCTGGTGACGTTCGGTTTCATGGCGGCGACAGTGGCGGTGGTGACCTTCCTGTATGGGCTGATTGCCGTGGTGCTGACCCATCAACTGGCCGAGCGCATGCGCGCCAGCCCGCGAATTGCCAATATGTTCGAGCGGC                                                 <  1:395479/234‑1                                   CAAGGCGATCATGTTCTACATGGCGTTTTTCCCGCTGTTCGTCGACCCGGTGAAGCACCAAGGGCTGGTGACGTTCGGTTTCATGGCGGCGACAGTGGCGGTGGTGACCTTCCTGTATGGGCTGATTGCCGTGGTGCTGACCCATCAACTGGCCGAGCGCATGCGCGCCAGCCCGCGAATTGCCAATATGTTCGAGCG                                                   >  2:1058539/1‑198                                                                          CGTCGACCCGGTGAAGCACCAAGGGCTGGTGACGTTCGGTTTCATGGCGGCGACAGTGGCGGTGGTGACCTTCCTGTATGGGCTGATTGCCGTGGTGCTGACCCATCAACTGGCCGAGCGCATGCGCGCCAGCCCGCGAATTGCCAATATGTTCGAGCGGCTGGCGC                                           <  2:1222133/167‑1                                                                             CGACCCGGTGAAGCACCAAGGGCTGGTGACGTTCGGTTTCATGGCGGCGACAGTGGCGGTGGTGACCTTCCTGTATGGGCTGATTGCCGTGGTGCTGACCCATCAACTGGCCGAGCGCATGCGCGCCAGCCCGCGAATTGCCAATATGTTCGAGCGGCTGGCGCGCATGCGCTCGG                               <  2:800096/176‑1                                                                                                  GCTGGTGACGTTCGGTTTCATGGCGGCGACAGTGGCGGTGGTGACCTTCCTGTATGGGCTGATTGCCGTGGTGCTGACCCATCAACTGGCCGAGCGCATGCGCGCCAGCCCGCGAATTGCCAATATGTTCGAGCGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGC      >  1:587223/1‑180                                                                                                                                AGTGGCGGTGGTGACCTTCCTGTATGGGCTGATTGCCGTGGTGCTGACCCATCAACTGGCCGAGCGCATGCGCGCCAGCCCGCGAATTGCCAATATGTTCGAGCGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGT                  <  2:587220/138‑1                                                                                                                                                                     GTGGTGCTGACCCATCAACTGGCCGAGCGCATGCGCGCCAGCCCGCGAATTGCCAATATGTTCGAGCGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATC  <  1:1204204/117‑1                                                                                                                                                                                                                    AATTGCCAATATGTTCGAGCGGCTGGCGCGCATGCGCTCGGCCAGT                          <  1:237480/46‑1                                                                                                                                                                                                                                              CGCGCATGCGCTCGGCCAGTTGATGGGTCAGCAC            <  2:1077843/34‑1                                                                                                                                                                                                                                                                                           TGCGCCAGACCATGATGATCACCCTGCTCAACCCCAAGGCGATCATGTTCTACATGGCGTTTTTCCCGCTGTTCGTCGACCCGGTGAAGCACCAAGGGCTGGTGACGTTCGGTTTCATGGCGGCGACAGTGGCGGTGGTGACCTTCCTGTATGGGCTGATTGCCGTGGTGCTGACCCATCAACTGGCCGAGCGCATGCGCGCCAGCCCGCGAATTGCCAATATGTTCGAGCGGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1424885‑1424647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggcgCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATC  >  AE015451/1424687‑1424728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.