New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1424647 =	63 (0.920)	5 (0.080)	5/322	NT	8.3%	coding (720/768 nt)	PP_1248	Transporter, LysE family
	?	AE015451	1424687 =	51 (0.780)					coding (680/768 nt)	PP_1248	Transporter, LysE family

TGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGCCTTGGGGTTGAGCAGGGTGATCATCATGGTCTGGCGCAGGTACTGGCCGTTGTCCATGCGG  >  AE015451/1424453‑1424908                                                                                                                                                                                                                                           |                                                                                                                                                                                                                              tGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGgcgcg                                                                                                                                                                                                                              >  1:630258/1‑236 (MQ=255)                      ggCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGt                                                                                                                                                                                                              <  2:839853/231‑1 (MQ=255)                        ccTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGgcgcg                                                                                                                                                                                                                              >  1:79612/1‑213 (MQ=255)                        ccTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATgg                                                                                                                                                                                                        >  1:1199129/1‑235 (MQ=255)                                     aaCCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACg                                                                                                                                                                                            >  2:407250/1‑234 (MQ=255)                                      aCCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCa                                                                                                                                                                                         <  1:400772/236‑1 (MQ=255)                                      aCCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCa                                                                                                                                                                                         <  1:1044876/236‑1 (MQ=255)                                      aCCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTCGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACgg                                                                                                                                                                                           <  1:686863/234‑1 (MQ=255)                                                     aaTGGCTGAGTGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGcaccac                                                                                                                                                                                             >  1:731/1‑217 (MQ=255)                                                     aaTGGCTGAGTGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAg                                                                                                                                                                           >  1:1174595/1‑235 (MQ=255)                                                               tGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGt                                                                                                                                                                                                              <  2:942315/190‑1 (MQ=255)                                                                gAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCGCCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCa                                                                                                                                                                                                    >  1:1246959/1‑199 (MQ=255)                                                                gAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCa                                                                                                                                                                                     >  2:577711/1‑214 (MQ=255)                                                                gAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGcc                                                                                                                                                                                  >  2:555431/1‑217 (MQ=255)                                                                     cgtcgacccggtgaagcaccaagggctggtgacgttcggtttcatggcggcgacagtggcggtggtgaccttcctgtatgggctgattgccgtggtgctgacccatcaactggccgagcgcatgcgcgccagcccgcgaattgccaatatgttcgagcggctggcgc                                                                                                                                                                                                                               <  2:1222133‑M2/1‑1 (MQ=255)                                                                       tCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCAc                                                                                                                                                         <  1:879884/235‑1 (MQ=255)                                                                        cgacccggtgaagcaccaagggctggtgacgttcggtttcatggcggcgacagtggcggtggtgaccttcctgtatgggctgattgccgtggtgctgacccatcaactggccgagcgcatgcgcgccagcccgcgaattgccaatatgttcgagcggctggcgCGCATGCGCTCgg                                                                                                                                                                                                                   <  2:800096‑M2/13‑1 (MQ=255)                                                                        ccccGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCg                                                                                                                                                                                                                    >  1:924788/1‑175 (MQ=255)                                                                         cccGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCCCCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGc                                                                                                                                                                                          <  1:287842/200‑1 (MQ=255)                                                                            gggAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTAGCGGGCTGGCGCGCATGCGCTCg                                                                                                                                                                                                                    >  1:196017/1‑171 (MQ=255)                                                                             ggAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCACATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTcg                                                                                                                                                    <  2:560286/234‑1 (MQ=255)                                                                                   aTGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAg                                                                                                                                                                                    <  1:1131064/196‑1 (MQ=255)                                                                                             gctggtgacgttcggtttcatggcggcgacagtggcggtggtgaccttcctgtatgggctgattgccgtggtgctgacccatcaactggccgagcgcatgcgcgccagcccgcgaattgccaatatgttcgagcggctggcgCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGc                                                                                                                                                                                          >  1:587223‑M2/143‑180 (MQ=255)                                                                                                        tAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAg                                                                                                                                                                           >  1:182461/1‑184 (MQ=255)                                                                                                              tGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATAc                                                                                                                                                                             >  1:678798/1‑176 (MQ=255)                                                                                                              tGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATAc                                                                                                                                                                             <  2:678795/176‑1 (MQ=255)                                                                                                                  gTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGAt                                                                                                                                                                                                          >  2:1026209/1‑143 (MQ=255)                                                                                                                  gTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATa                                                                                                                                                                              >  1:1196917/1‑171 (MQ=255)                                                                                                                  gTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGt                                                                                                                                                      <  1:74809/195‑1 (MQ=255)                                                                                                                  gTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCa                                                                                                             >  1:892775/1‑236 (MQ=255)                                                                                                                  gTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCa                                                                                                             >  1:153300/1‑236 (MQ=255)                                                                                                                   tCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACg                                                                                                                                  <  2:1199126/214‑1 (MQ=255)                                                                                                                         gcgcCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGAAAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGt                                                                                                       >  2:631923/1‑235 (MQ=255)                                                                                                                           agtggcggtggtgaccttcctgtatgggctgattgccgtggtgctgacccatcaactggccgagcgcatgcgcgccagcccgcgaattgccaatatgttcgagcggctggcgCGCATGCGCTCGGCCAGTTGATGGGt                                                                                                                                                                                                      <  2:587220‑M2/26‑1 (MQ=255)                                                                                                                             ccGGACCCTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGc                                                                                                                                                                                          <  1:347202/148‑1 (MQ=255)                                                                                                                                   acTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGt                                                                                                                                                                                                              <  1:368932/122‑1 (MQ=255)                                                                                                                                          ggCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGaaaa                                                                                     >  1:429287/1‑236 (MQ=255)                                                                                                                                                  aTCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAAc                                                                                                                                        >  1:288859/1‑177 (MQ=255)                                                                                                                                                  aTCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTcg                                                                                                     >  1:1047592/1‑212 (MQ=255)                                                                                                                                                  aTCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCACCGCCCTGAAACCGAACg                                                                                                                                  >  2:961885/1‑183 (MQ=255)                                                                                                                                                     cgcgcATCGCCGCCAGTTTGATGCCGAATCCCCCCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGt                                                                                                                                                                                                              <  2:348893/103‑1 (MQ=255)                                                                                                                                                     aGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGt                                                                                                                                                                                                              <  2:42256/104‑1 (MQ=255)                                                                                                                                                        gcATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGCCCa                                                                                                                                                                                                                >  2:188180/1‑99 (MQ=255)                                                                                                                                                         gattgccgtggtgctgacccatcaactggccgagcgcatgcgCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGcaccac                                                                                                                                                                                             <  1:1204204‑M1/75‑1 (MQ=255)                                                                                                                                                          ctCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACa                                                                      <  2:892772/234‑1 (MQ=255)                                                                                                                                                          aTCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCgg                                                                                                                                                                                                                   <  2:123169/94‑1 (MQ=255)                                                                                                                                                          aTCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCCCGGCCAGTTGATGGGTCAGCACCCCGGCACTCAGCCCATa                                                                                                                                                                              >  2:43701/1‑131 (MQ=255)                                                                                                                                                             gccgtggtgctgacccatcaactggccgagcgcatgcgCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGc                                                                                                                          >  1:587223‑M1/39‑180 (MQ=255)                                                                                                                                                                gtggtgctgacccatcaactggccgagcgcatgcgcgccagcccgcgaattgccaatatgttcgagcggctggcgCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATc                                                                                                                                                                                      <  1:1204204‑M2/42‑1 (MQ=255)                                                                                                                                                                         acccatcaactggccgagcgcatgcgCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACt                                                                                                                                                        <  2:587220‑M1/112‑1 (MQ=255)                                                                                                                                                                                   ccaccgGGCACGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGc                                                                                                                                                                                          <  2:159062/94‑1 (MQ=255)                                                                                                                                                                                    caccaGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGCCTTGGGGTTGa                                                    <  1:577714/227‑1 (MQ=255)                                                                                                                                                                                      ccgagcgcatgcgCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTcg                                                                                                     <  2:800096‑M1/163‑1 (MQ=255)                                                                                                                                                                                             aGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGCCTTGGGGTTGAGCAGGGTGATCATCATg                                   <  1:897245/235‑1 (MQ=255)                                                                                                                                                                                                 cccGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTg                                                                                                                     <  2:885959/149‑1 (MQ=255)                                                                                                                                                                                                  gCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTcgacg                                                                                                  <  2:1222133‑M1/166‑1 (MQ=255)                                                                                                                                                                                                        GCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGCCTTGGGGTTGAGCAGGGTGATCATCATGGTCTGGCGCa                         <  1:395479‑M1/234‑1 (MQ=255)                                                                                                                                                                                                          CGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGCCTTg                                                           >  2:1058539‑M1/1‑198 (MQ=255)                                                                                                                                                                                                               gAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCGCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGCCTTGGGGTTGAGCAGGGTGATCATCATGGTCTGGCGCAGGTACTGGc                >  1:1184054/1‑236 (MQ=255)                                                                                                                                                                                                               aattgccaatatgttcgagcggctggcgCGCATGCGCTCGGCCAGt                                                                                                                                                                                                              <  1:237480‑M2/18‑1 (MQ=255)                                                                                                                                                                                                                 aCATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCgg                                                                                          <  1:849592/160‑1 (MQ=255)                                                                                                                                                                                                                      ttGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGCCTTGGGGTTGAGCAGGGTGATCATCATgg                                  <  2:1026439/211‑1 (MQ=255)                                                                                                                                                                                                                       tGGCAATTCGCGGGCTGGGGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAAc                                                                                                                                        <  2:719854/108‑1 (MQ=255)                                                                                                                                                                                                                          cAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGCCTTGGGGTTGAGCAGGGTGATCATCATGGTCTGGCGCAGGTACTGGCCGTTGTCCATg     <  1:549534/236‑1 (MQ=255)                                                                                                                                                                                                                           aaTTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGCCTTGGGGTTGAGCAGGGTGATCATCATGGTCTGGCGCAGGTACTGGCCGTTGTCCATg     <  1:1241280/235‑1 (MQ=255)                                                                                                                                                                                                                             ttCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGCCTTGGGGTTGAGCAGGGTGATCATCATGGTCTGGCGCAGGTACTGGCCGTTGTCCATGCgg  <  1:854101/236‑1 (MQ=255)                                                                                                                                                                                                                                  gggcgggcGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGCCTTg                                                           <  2:977723/174‑1 (MQ=255)                                                                                                                                                                                                                                  gggCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGcc                                                              >  1:1249050/1‑171 (MQ=255)                                                                                                                                                                                                                                         cgCGCATGCGCTCGGCCAGTTGATGGGTCAGcac                                                                                                                                                                                                <  2:1077843‑M2/32‑1 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                              TGCGGCGTTGTTCGTGAGCAAGGCCTATCAGCTGGAAACCAATTGACTGGGTAATGGCTGAGTGAACAAGTCCCCGGGAACCATGAGTTGCCGGGGGCTTTTTTAGGGTTGCTGTCAGGCGCGCCCGGACACTGTCGGGCTTGGGATCAGCGCATCGCCGCCAGTTTGATGCCGAATCCCACCAGGCAAGCCCCCGCCAGCCGCTCGAACATATTGGCAATTCGCGGGCTGGCGCGCATGCGCTCGGCCAGTTGATGGGTCAGCACCACGGCAATCAGCCCATACAGGAAGGTCACCACCGCCACTGTCGCCGCCATGAAACCGAACGTCACCAGCCCTTGGTGCTTCACCGGGTCGACGAACAGCGGGAAAAACGCCATGTAGAACATGATCGCCTTGGGGTTGAGCAGGGTGATCATCATGGTCTGGCGCAGGTACTGGCCGTTGTCCATGCGG  >  AE015451/1424453‑1424908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.