New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2644844	51 (0.740)	3 (0.050)	3/316	NT	6.0%	coding (2470/2499 nt)	PP_2316	putative ABC transporter, permease protein
	?	AE015451	= 2645004	47 (0.730)					coding (2310/2499 nt)	PP_2316	putative ABC transporter, permease protein

ACGATTACATCTCGATCGATTCGCCCATGGCCCGTGCCTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2644606‑2644844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcgggctATTGGCGGCCGTGGGCTGCGAACTGATTACCTGGGTGCTGTACCGCTATGCCTTCGATTTGCAGTGGAGCCCGCACCCGTGGCTGCTGGTGTTGCCGCTGACGGGGGCACTGCTGGTGGGTGGTGCTGGGGT  <  AE015451/2645004‑2644873                                                                                                                                                                                                                                                                                                                                                                                     ACGATTACATCTCGATCGATTCGCCCATGGCCCGTGCCTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGG                                                                                                                                         >  1:518349/1‑236    ATTACATCTCGATCGATTCGCCCATGGCCCGTGCCTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCT                                                                                                                                      >  1:596458/1‑236                                                                                              CGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTATTGGCGGCCGTGGGCTGCGAACTGATTACCTGGGTGCTGTACCGCTATGCCTTCGATTTGCAGTGGAGCCCGCACCCGTGGCTGCTGG                                             <  1:1199260/235‑1                                                                                                                                    GTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAc                                                                                                                                            >  1:161440/1‑101                                                                                                                                                                                         CGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTATTGGCGGCCGTGGGCTGCGAACTGATTACCTGGGTGCTGTACCGCTATGCCTTCGATTTGCAGTGGAGCCCGCACCCGTGGCTGCTGGTGTTGCCGCTGACGGGGGCACTGCTGGTGGGTGGTGCTGGGGT  >  1:1016190/1‑187                                                                                                                                                                                         CGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTATTGGCGGCCGTGGGCTGCGAACTGATTACCTGGGTGCTGTACCGCTATGCCTTCGATTTGCAGTGGAGCCCGCACCCGTGGCTGCTGGTGTTGCCGCTGACGGGGGCACTGCTGGTGGGTGGTGCTGGGGT  <  2:1016187/187‑1                                                                                                                                                                                                                                          CGGGCTATTGGCGGCCGTGGGCTGCGAACTGATTACCTGGGTGCTGTACCGCTATGCCTTCGATTTGCAGTGGAGCCCGCACCCGTGGCTGCTGGTGTTGCCGCTGACGGGGGCACTGCTGGTGGGTG            <  2:116426/128‑1                                                                                                                                                                                                                                                                                                                                                                                     ACGATTACATCTCGATCGATTCGCCCATGGCCCGTGCCTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2644606‑2644844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcgggctATTGGCGGCCGTGGGCTGCGAACTGATTACCTGGGTGCTGTACCGCTATGCCTTCGATTTGCAGTGGAGCCCGCACCCGTGGCTGCTGGTGTTGCCGCTGACGGGGGCACTGCTGGTGGGTGGTGCTGGGGT  <  AE015451/2645004‑2644873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.