New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2644844	51 (0.740)	3 (0.050)	3/316	NT	6.0%	coding (2470/2499 nt)	PP_2316	putative ABC transporter, permease protein
	?	AE015451	= 2645004	47 (0.730)					coding (2310/2499 nt)	PP_2316	putative ABC transporter, permease protein

ATTACATCTCGATCGATTCGCCCATGGCCCGTGCCTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGC  >  AE015451/2644609‑2645072                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                     aTTACATCTCGATCGATTCGCCCATGGCCCGTGCCTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCT                                                                                                                                                                                                                                      >  1:596458‑M1/1‑236 (MQ=255)               gatTCGCCCATGGCCCGTGCCTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAAcgc                                                                                                                                                                                                                          >  2:680745/1‑234 (MQ=255)                       cATGGCCCGTGCCTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGtt                                                                                                                                                                                                                <  1:449538/236‑1 (MQ=255)                         tGGCCCGTGCCTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcc                                                                                                                                                                                                              <  1:692935/236‑1 (MQ=255)                           gCCCGGGCCTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACTGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCTAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcc                                                                                                                                                                                                              <  2:1199283/234‑1 (MQ=255)                                tGCCTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcccagca                                                                                                                                                                                                         <  2:858185/234‑1 (MQ=255)                                   cTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcccagcaccc                                                                                                                                                                                                      <  2:852232/234‑1 (MQ=255)                                       cTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcccagcaccccagca                                                                                                                                                                                                 <  1:1002465/235‑1 (MQ=255)                                        tGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcccagcaccccagca                                                                                                                                                                                                 >  1:441785/1‑234 (MQ=255)                                         gaagaaGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGc                                                                                                                                                                                                                                   >  2:798699/1‑199 (MQ=255)                                         gaagaaGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcccagcaccccag                                                                                                                                                                                                   <  1:779826/231‑1 (MQ=255)                                         gaagaaGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGcacca                                                                                                                                                                                              >  1:622481/1‑236 (MQ=255)                                             aagGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCAccaccca                                                                                                                                                                                          >  1:850648/1‑236 (MQ=255)                                                gaggaggTGGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACccacca                                                                                                                                                                                       <  1:1009432/236‑1 (MQ=255)                                                      ggTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGt                                                                                                                                                                                  <  1:680748/235‑1 (MQ=255)                                                                   tggtgCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAAGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGc                                                                                                                                                                      <  2:622478/234‑1 (MQ=255)                                                                           acacCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACCCCGCCAGCGGGCTGGCATTCACCGCCCGCCGTGTTCCCAGCACCCCAGCCCCCCCCCCcagc                                                                                                                                                                                     >  2:1011677/1‑211 (MQ=255)                                                                           acacCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcc                                                                                                                                                                                                              <  1:919567/186‑1 (MQ=255)                                                                                    ggTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACg                                                                                                                                                   >  1:906939/1‑236 (MQ=255)                                                                                     gTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGTCTGGCAt                                                                                                                                                                                                                                 >  1:141422/1‑157 (MQ=255)                                                                                     gTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcc                                                                                                                                                                                                              >  1:1047217/1‑176 (MQ=255)                                                                                          gCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCg                                                                                                                                             >  1:1033243/1‑236 (MQ=255)                                                                                           cGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTattggcggccgtgggctgcgaactgattacctgggtgctgtaccgctatgccttcgatttgcagtggagcccgcacccgtggctgctgg                                                                                                                                             <  1:1199260‑M1/235‑90 (MQ=255)                                                                                               gtGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGc                                                                                                                                                                   <  1:1236894/208‑1 (MQ=255)                                                                                                       tgAGCAGCATCAGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAaca                                                                                                                                                               <  1:1175445/205‑1 (MQ=255)                                                                                                            agcaTCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcc                                                                                                                                                                                                              <  2:487369/153‑1 (MQ=255)                                                                                                              caTCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAg                                                                                                                         >  1:632097/1‑236 (MQ=255)                                                                                                               aTCCGTTACGGCCAGGTTCTCTCGACTGACTGACTTGCCCGTCTTCCGTCAGCTTGAGGCATGTGCTTTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCCTTCAACCCCCGCAGTGTTccccgcacc                                                                                                                                                                                                       >  2:931287/1‑157 (MQ=255)                                                                                                               aTCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCggg                                                                                                                                           >  2:1228729/1‑217 (MQ=255)                                                                                                               aTCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAg                                                                                                                         >  1:630479/1‑235 (MQ=255)                                                                                                                tCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTCCCCCCGTCGGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCaaa                                                                                                                               >  1:727444/1‑228 (MQ=255)                                                                                                                         gCCAGGGCGTCGCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcc                                                                                                                                                                                                              <  2:26636/140‑1 (MQ=255)                                                                                                                          ccAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCa                                                                                                                      <  2:627969/227‑1 (MQ=255)                                                                                                                              ggCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACa                                                                                                            <  2:632094/233‑1 (MQ=255)                                                                                                                                                   gCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGc                                                                                    <  1:1011680/236‑1 (MQ=255)                                                                                                                                                        tCTTGCGTCAGCTTGAGGCATGGGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGGGTTCCCAGCACCCCAGcaccac                                                                                                                                                                                             >  1:382379/1‑126 (MQ=255)                                                                                                                                                           tGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCACGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGGGCGGGCTCCACCGCAAATCGAAGGCATAGCGGTACAg                                                                                                           >  1:249769/1‑205 (MQ=255)                                                                                                                                                                                cTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGa                                                                                                                           <  2:926371/168‑1 (MQ=255)                                                                                                                                                                                cTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGtt                                                                                          >  1:947083/1‑201 (MQ=255)                                                                                                                                                                                  gTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCACCACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAg                                                                                                                         <  2:874043/168‑1 (MQ=255)                                                                                                                                                                                   tCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTNAGCGGCAACACCANCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTa                                                                                                              <  2:820432/178‑1 (MQ=255)                                                                                                                                                                                      cGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTattggcggccgtgggctgcgaactgattacctgggtgctgtaccgctatgccttcgatttgcagtggagcccgcacccgtggctgctggtgttgccgctgacgggggcactgctggtgggtggtgctggggt                                                                                                  >  1:1016190‑M1/1‑55 (MQ=255)                                                                                                                                                                                      cGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTattggcggccgtgggctgcgaactgattacctgggtgctgtaccgctatgccttcgatttgcagtggagcccgcacccgtggctgctggtgttgccgctgacgggggcactgctggtgggtggtgctggggt                                                                                                  <  2:1016187‑M1/187‑133 (MQ=255)                                                                                                                                                                                                gcTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGGCAGCGGGCTGGTATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTTAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGACGACATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAACCCGCTGGCACCACCCAGCAGGCCGAACt                                       >  1:1212149/1‑236 (MQ=255)                                                                                                                                                                                                gcTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGccccc                                                                                                                                                                            >  1:134355/1‑103 (MQ=255)                                                                                                                                                                                                gcTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAg                                                                                                                         >  1:367242/1‑154 (MQ=255)                                                                                                                                                                                                              cTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGccc                                                                                  <  2:1002554/179‑1 (MQ=255)                                                                                                                                                                                                                     cTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGgc                                                                             <  2:1047214/177‑1 (MQ=255)                                                                                                                                                                                                                        gcgcAACCCCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcc                                                                                                                                                                                                              <  2:283476/45‑1 (MQ=255)                                                                                                                                                                                                                          gcAACACCGCCAGCGGGCTGGCATTCAAcgcccgc                                                                                                                                                                                                                      <  1:235894/35‑1 (MQ=255)                                                                                                                                                                                                                          gcAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCa                                                                                                                      <  2:457530/131‑1 (MQ=255)                                                                                                                                                                                                                          gcAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCa                                                                                                                      >  1:457533/1‑131 (MQ=255)                                                                                                                                                                                                                          gaaaCCCCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTcccagcaccccagca                                                                                                                                                                                                 <  1:347220/54‑1 (MQ=255)                                                                                                                                                                                                                          ccAACCCCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCAccacccac                                                                                                                                                                                         <  2:134355/63‑1 (MQ=255)                                                                                                                                                                                                                               cccGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAAt                                                                                                                              <  1:117289/117‑1 (MQ=255)                                                                                                                                                                                                                                 cGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTc                                 <  2:906936/209‑1 (MQ=255)                                                                                                                                                                                                                                     aGCGGGCTGGCATTCAACGCCCGCCGTGTCCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGgccgcgccgc  <  1:887738/236‑1 (MQ=255)                                                                                                                                                                                                                                       cGGGCTattggcggccgtgggctgcgaactgattacctgggtgctgtaccgctatgccttcgatttgcagtggagcccgcacccgtggctgctggtgttgccgctgacgggggcactgctggtgggtg                                                                                                            <  2:116426‑M1/128‑123 (MQ=255)                                                                                                                                                                                                                                         ggCTGGCATTCAGCGCCCGCCGTGTTCCCAGCACCCCAGCCCCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACa                                                                                                            <  2:203221/126‑1 (MQ=255)                                                                                                                                                                                                                                         ggCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGa                                          >  1:819136/1‑192 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                     ATTACATCTCGATCGATTCGCCCATGGCCCGTGCCTTGCTGAAGAAGGAGGAGGGTGATGAGGTGGTGGTGCATACACCTACCGGTGAAGCGACCTGGTATGTGAGCAGCATCCGTTACGGCCAGGGCGTCTCGACGGACTGACTGGCCCGTCTTGCGTCAGCTTGAGGCATGTGCTGTCCCGGCAGAAGCGCTGACTGCCAGGCCTCAAGCCTCGCGCAACACCGCCAGCGGGCTGGCATTCAACGCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGC  >  AE015451/2644609‑2645072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.