New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3287449 =	44 (0.640)	3 (0.050)	3/306	NT	7.0%	coding (664/813 nt)	xthA	exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI
	?	AE015451	3287465 =	40 (0.640)					coding (648/813 nt)	xthA	exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI

TGGATGGAACGTTTGAAAGGCTGGGGGTTGGTAGACAGCTTCCGCCACCTGTACCCGGACGTGACCGACCGTTTCAGCTGGTTCGACTACCGAAGCCGCGGCTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3287554‑3287449 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaagccgcggcttcgGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGCCAATGCCGATATCACAGTCTTGCGGCGAGATGTTCATGTCGCCCATCACCAGCACTGGCTGGTCGTTGCGGAACT  >  AE015451/3287465‑3287694                                                                                                                                                                                                                                                                                                                                                  TGGATGGAACGTTTGAAAGGCTGGGGGTTGGTAGACAGCTTCCGCCACCTGTACCCGGACGTGACCGACCGTTTCAGCTGGTTCGACTACCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTC                                                                                                                                                                               <  2:860342/163‑1                   GGCTGGGGGTTGGTAGACAGCTTCCGCCACCTGTACCCGGACGTGACCGACCGTTTCAGCTGGTTCGACTACCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTT                                                                                     <  1:860345/235‑1                                          CCGCCACCTGTACCCGGACGTGACCGACCGTTTCAGCTGGTTCGACTACCGAAGCCGC                                                                                                                                                                                                                                               >  2:1015763/1‑58                                             CCACCTGTACCCGGACGTGACCGACCGTTTCAGCTGGTTCGACTACCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGGCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAAC                                                                                                                                                        >  1:273436/1‑142                                                                                      ACTACCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTT                                                                                                                                                              >  1:233550/1‑95                                                                                                  GCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGG                                                                                                                                                                                       >  1:1015766/1‑58                                                                                                     GCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGCCAATGCCGATATCACAGTCTTGCGGCGAGATGTTCATGTCGCCCATCACCAGCACTGGCTGGTCGTTGCGGAACT  >  1:1222922/1‑236                                                                                                                                                                                                                                                                                                                                                  TGGATGGAACGTTTGAAAGGCTGGGGGTTGGTAGACAGCTTCCGCCACCTGTACCCGGACGTGACCGACCGTTTCAGCTGGTTCGACTACCGAAGCCGCGGCTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3287554‑3287449 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaagccgcggcttcgGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGCCAATGCCGATATCACAGTCTTGCGGCGAGATGTTCATGTCGCCCATCACCAGCACTGGCTGGTCGTTGCGGAACT  >  AE015451/3287465‑3287694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.