New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3287449 =	44 (0.640)	3 (0.050)	3/306	NT	7.0%	coding (664/813 nt)	xthA	exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI
	?	AE015451	3287465 =	40 (0.640)					coding (648/813 nt)	xthA	exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI

AAGTGTGGGCCCAAGGTGTGCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGCCAATGCCGATATCACAGTCTTGCGGCGAGATGTTCATGTCGCCCATCACCAGCACTGGCTGGTCGTTGCGGAACT  >  AE015451/3287258‑3287694                                                                                                                                                                                                                |                                                                                                                                                                                                                                      aaGTGTGGGCCCAAGGTGTGCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCa                                                                                                                                                                                                           >  1:560769/1‑236 (MQ=255)   gtgtGGGCCCAAGGTGTGCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGACCCAGCTGAAAcggtcg                                                                                                                                                                                                               >  2:868599/1‑230 (MQ=255)                 tgtgCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTg                                                                                                                                                                                           >  1:851783/1‑236 (MQ=255)                 tgtgCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGACGGTCACGTCCGGGTACAGGTg                                                                                                                                                                                           >  1:656569/1‑236 (MQ=255)                      aCCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCAc                                                                                                                                                                                                          <  2:921946/216‑1 (MQ=255)                      aCCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCAc                                                                                                                                                                                                          >  1:921949/1‑216 (MQ=255)                      aCCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTa                                                                                                                                                                                                 <  1:1225963/225‑1 (MQ=255)                      aCCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTa                                                                                                                                                                                                 >  2:1225960/1‑225 (MQ=255)                             gCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTa                                                                                                                                                                                                 >  1:32650/1‑218 (MQ=255)                             gCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACACCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGt                                                                                                                                                                                >  1:894608/1‑235 (MQ=255)                              cccGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTcc                                                                                                                                                                              >  2:875166/1‑235 (MQ=255)                                     cccTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGa                                                                                                                                                                                                                                >  2:778979/1‑179 (MQ=255)                                     cccTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTa                                                                                                                                                                                                 >  2:886214/1‑210 (MQ=255)                                             aacgccaaacgctggctgaagaccggcaagtgcagcttcctgccggaggagcgtgagtggatggaacgtttgaaaggctgggggttggtagacagcttccgccacctgtacccggacgtgaccgaccgtttcagctggttcgactacCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGcc                                                                                                                                                                <  1:860345‑M1/88‑1 (MQ=255)                                                tCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGcc                                                                                                                                                                >  2:1092354/1‑232 (MQ=255)                                                  aaCTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCGTCGGTAGTc                                                                                                                                                                                                                                  >  2:457701/1‑164 (MQ=255)                                                   aCTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTc                                                                                                                                                            >  2:794504/1‑233 (MQ=255)                                                   aCTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCaac                                                                                                                                                         >  2:876653/1‑235 (MQ=255)                                                            agATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGaa                                                                                                                                                                                                                               >  1:659243/1‑157 (MQ=255)                                                                 ggCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACt                                                                                                                                            >  2:851515/1‑235 (MQ=255)                                                                 ggCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACt                                                                                                                                            >  1:1239129/1‑235 (MQ=255)                                                                      aTGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCGCGAAGCCGCGGCTTCGGTa                                                                                                                                                                                                                                     >  2:160254/1‑141 (MQ=255)                                                                                       ccctCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAAcggtcgg                                                                                                                                                                                                              <  2:32650/144‑1 (MQ=255)                                                                                            ccGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACtt                                                                                                                <  1:876656/236‑1 (MQ=255)                                                                                                  aGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGt                                                                                                          >  1:405377/1‑236 (MQ=255)                                                                                                      tggatggaacgtttgaaaggctgggggttggtagacagcttccgccacctgtacccggacgtgaccgaccgtttcagctggttcgactaccgaagccgcggcttcgGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTc                                                                                                                                                                               <  2:860342‑M2/57‑1 (MQ=255)                                                                                                                gtttgaaaggctgggggttggtagacagcttccgccacctgtacccggacgtgcccgaccgtttcagctggttcgactacCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTgg                                                                                                                                                                                          >  1:273436‑M1/81‑142 (MQ=255)                                                                                                                 cccGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCCGCGttt                                                                                           >  1:1132359/1‑236 (MQ=255)                                                                                                                 cccGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCGACCa                                                                                                                                                                          >  2:692304/1‑157 (MQ=255)                                                                                                                      aaggctgggggttggtagacagcttccgccacctgtacccggacgtgaccgaccgtttcagctggttcgactacCGAAGCCGCGGCTTCGGTAGt                                                                                                                                                                                                                                   >  1:233550‑M1/75‑95 (MQ=255)                                                                                                                        ggctgggggttggtagacagcttccgccacctgtacccggacgtgaccgaccgtttcagctggttcgactaccgaagccgcggcttcgGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGtt                                                                                     <  1:860345‑M2/147‑1 (MQ=255)                                                                                                                        ccTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCg                                                                                                                                                                                        >  2:1170856/1‑136 (MQ=255)                                                                                                                        ccTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGGACAGGGGGCGGAAGCTGTCTACCAACCCCCAGc                                                                                                                                                                 >  2:342008/1‑159 (MQ=255)                                                                                                                                cgcgGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCggg                                                                              >  2:1218543/1‑234 (MQ=255)                                                                                                                                       gacagcttccgccacctgtacccggacgtgaccgaccgtttcagctggttcgactacCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTtccatcca                                                                                                                                              <  2:860342‑M1/106‑1 (MQ=255)                                                                                                                                                  ccacctgtacccggacgtgaccgaccgtttcagctggttcgactaccgaagccgcggcttcgGTAGTCGAACCAGCTGAAACGGTCGGGCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAAc                                                                                                                                                        >  1:273436‑M2/63‑142 (MQ=255)                                                                                                                                                     gCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGt                                                                                   >  1:584030/1‑208 (MQ=255)                                                                                                                                                      ccATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGCCAAt                                                                         <  2:851780/217‑1 (MQ=255)                                                                                                                                                        aTGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCt                                                                                                                      >  1:212731/1‑170 (MQ=255)                                                                                                                                                           aTCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGc                                                                             >  2:906951/1‑208 (MQ=255)                                                                                                                                                            tCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCtt                                                                                                       >  1:717923/1‑181 (MQ=255)                                                                                                                                                                       cgcAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGCCAATGCCGATATCACAGTCTTGCGGCGAGATGTTc                                          >  1:801275/1‑231 (MQ=255)                                                                                                                                                                        gcAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGCCAATGCCGATATCACAGTCTTgcggc                                                   >  1:884360/1‑221 (MQ=255)                                                                                                                                                                         cAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGCCAATGCCGATATCACAGTCTTGCGGCGAGATGTTCATGTCGc                                   >  1:501197/1‑236 (MQ=255)                                                                                                                                                                            gCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGCCAATGCCGATATCACAGTCTTGCGGCGAGATGTTCATGTCg                                    <  2:560766/232‑1 (MQ=255)                                                                                                                                                                             ccGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGCCAATGCCGATATCACAGTCTTGCGGCGAGATGTTCATGTCGCCCAt                               >  1:739144/1‑236 (MQ=255)                                                                                                                                                                                         tCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAAccc                                                                                                                                                                      >  1:892717/1‑89 (MQ=255)                                                                                                                                                                                         tCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAAccc                                                                                                                                                                      <  2:892714/89‑1 (MQ=255)                                                                                                                                                                                           actaccgaagccgcggcttcgGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCtt                                                                                                                                                              >  1:233550‑M2/22‑95 (MQ=255)                                                                                                                                                                                                       gcggcttcgGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCgg                                                                                                                                                                                       >  1:1015766‑M2/10‑58 (MQ=255)                                                                                                                                                                                                       GCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCgg                                                                                                                                                                                       >  2:1015763‑M1/1‑58 (MQ=255)                                                                                                                                                                                                          gcttcgGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGCCAATGCCGATATCACAGTCTTGCGGCGAGATGTTCATGTCGCCCATCACCAGCACTGGCTGGTCGTTGCGGAACt  >  1:1222922‑M2/7‑236 (MQ=255)                                                                                                                                                                                                                |                                                                                                                                                                                                                                      AAGTGTGGGCCCAAGGTGTGCACCTTGGGCCCGTCACCCTAATCAGCTCAACTCCAGCCAGATCGGCGCATGGTCCGACGGCTTTTCCATCCCGCGCAGCTCATAGTCCACGCCCGCTGCCTTGATGCGCGGCACCAGCTGCTGTGAGGCCATGATCAGGTCGATGCGCAGGCCGCGCTTGGGCTCGTCCTCGAAGCCGCGGCTTCGGTAGTCGAACCAGCTGAAACGGTCGGTCACGTCCGGGTACAGGTGGCGGAAGCTGTCTACCAACCCCCAGCCTTTCAAACGTTCCATCCACTCACGCTCCTCCGGCAGGAAGCTGCACTTGCCGGTCTTCAGCCAGCGTTTGGCGTTGTCCGGGCCAATGCCGATATCACAGTCTTGCGGCGAGATGTTCATGTCGCCCATCACCAGCACTGGCTGGTCGTTGCGGAACT  >  AE015451/3287258‑3287694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.