New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3662642 =	66 (0.960)	4 (0.060)	4/328	NT	6.1%	coding (192/1143 nt)	PP_3226	Acyl‑CoA dehydrogenase‑related protein
	?	AE015451	3662663 =	59 (0.890)					coding (171/1143 nt)	PP_3226	Acyl‑CoA dehydrogenase‑related protein

TCATCCATGCGAATACGGTCTTAGGCAACGCACCGTCATTCAGGGATGAGCCTCATGAGTCAACCGTCCGACAGCGCTCTCGCCGAGCTGACGCTGGCCCTCGCGGCAAACGCCGAGCGCTACGACCGCAGCGCCCAGTTCCCCCAGGACAACTTCCACTTGCTGCACCGCCACGGGCTGCTCGCCCTCACTGTACCCCGTGCCTTCGGCGGAGGCGGCGCGGACCTTGCCAGCG‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3662878‑3662642 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcg‑ccGCCTCCGCCGAAGGCACGGGGTACAGTGAGGGCGAGCAGCCCGTGGCGGTGCAGCAAGTGGAAGTTGTCCTGGGGGAACTGGGCGCTGCGGTCGTAGCGCTCGGCGTTTGCCGCGAGGGCCAGCGTCAGCTCGGCGAGAGCGCTGTCGGACGGTTGACTCATGAGGCTCATCCCTGAATGACGGTGCGTTGCCTAAGACCGTATTCGCATGGATGAAGGCTGTAAAAGGCTTTT  >  AE015451/3662663‑3662896                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCATCCATGCGAATACGGTCTTAGGCAACGCACCGTCATTCAGGGATGAGCCTCATGAGTCAACCGTCCGACAGCGCTCTCGCCGAGCTGACGCTGGCCCTCGCGGCAAACGCCGAGCGCTACGACCGCAGCGCCCAGTTCCCCCAGGACAACTTCCACTTGCTGCACCGCCACGGGCTGCTCGCCCTCACTGTACCCCGTGCCTTCGGCGGAGGCGGCGCGGACCTTGCCAGCG‑C                                                                                                                                                                                                                                             >  1:904401/1‑236  CATCCATGCGAATACGGTCTTAGGCAACGCACCGTCATTCAGGGATGAGCCTCATGAGTCAACCGTCCGACAGCGCTCTCGCCGAGCTGACGCTGGCCCTCGCGGCAAACGCCGAGCGCTACGACCGCAGCGCCCAGTTCCCCCAGGACAACTTCCACTTGCTGCACCGCCACGGGCTGCTCGCCCTCACTGTACCCCGTGCCTTCGGCGGAGGCGGCGCGGACCTTGCCAGCG‑CC                                                                                                                                                                                                                                            >  1:747138/1‑236                                                    CTCATGAGTCAACCGTCCGACAGCGCTCTCGCCGAGCTGACGCTGGCCCTCGCGGCAAACGCCGAGCGCTACGACCGCAGCGCCCAGTTCCCCCAGGACAACTTCCACTTGCTGCACCGCCACGGGCTGCTCGCCCTCACTGTACCCCGTGCCTTCGGCGGAGGCGACGCGGACCTTGCCAG                                                                                                                                                                                                                                                 >  2:637824/1‑182                                                                                                                                           TTCCCCCAGGACAACTTCCACTTGCTGCACCGCCACGGGCTGCTCGCCCTCACTGTACCCCGTGCCTTCGGCGGAGGCGGCGCGGACCTTGCCAGCG‑CCGCCTCCGCCGAAGGCACGGGGTACAGTGAGGGCGAGCAGCCCGTGGCGGTGCAGCAAGTGGAAGTTGTCCTG                                                                                                                                                                    <  2:1098718/171‑1                                                                                                                                                        ACTCCCCCTTGCTGCACCGCCACGGGCTGCTCGCCCTCACTGTACCCCGTGCCTCCGGCGGAGGCGGCGCGGACCTTGCCAGCGCCCGCCTCCGCCGAAGGCACG                                                                                                                                                                                                                          <  1:159455/105‑1                                                                                                                                                                                        GCCCTGACTGTACCCCGTGCCTTCGGCGGAGGCGGCGCGGACCTTGCCAGCG‑CCGCCTCCGCCGAAGGCACGGG                                                                                                                                                                                                                        <  2:741461/74‑1                                                                                                                                                                                                             TTCGGCGGAGGCGGCGCGGACCTTGCCAGCG‑CCGCCTCCGCCGAAGGCACGGGGTACAGTGAGGGC                                                                                                                                                                                                           <  1:284016/66‑1                                                                                                                                                                                                                                              CGCCTCCGCCGAAGGCACGGGGTACAGTGAGGGCGAGCAGCCCGTGGCGGTGCAGCAAGTGGAAGTTGTCCTGGGGGAACTGGGCGCTGCGGTCGTAGCGCTCGGCGTTTGCCGCGAGGGCCAGCGTCAGCTCGGCGAGAGCGCTGTCGGACGGTTGACTCATGAGGCTCATCCCTGAATGACGGTGCGTTGCCTAAGACCGTATTCGCATGGATGAAGGCTGTAAAAGGCTTTT  <  1:1099144/235‑1                                                                                                                                                                                                                                              CGCCTCCGCCGAAGGCACGGGGTACAGTGAGGGCGAGCAGCCCGTGGCGGTGCAGCAAGTGGAAGTTGTCCTGGGGGAACTGGGCGCTGCGGTCGTAGCGCTCGGCGTTTGCCGCG                                                                                                                         >  1:225866/1‑116                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCATCCATGCGAATACGGTCTTAGGCAACGCACCGTCATTCAGGGATGAGCCTCATGAGTCAACCGTCCGACAGCGCTCTCGCCGAGCTGACGCTGGCCCTCGCGGCAAACGCCGAGCGCTACGACCGCAGCGCCCAGTTCCCCCAGGACAACTTCCACTTGCTGCACCGCCACGGGCTGCTCGCCCTCACTGTACCCCGTGCCTTCGGCGGAGGCGGCGCGGACCTTGCCAGCG‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3662878‑3662642 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcg‑ccGCCTCCGCCGAAGGCACGGGGTACAGTGAGGGCGAGCAGCCCGTGGCGGTGCAGCAAGTGGAAGTTGTCCTGGGGGAACTGGGCGCTGCGGTCGTAGCGCTCGGCGTTTGCCGCGAGGGCCAGCGTCAGCTCGGCGAGAGCGCTGTCGGACGGTTGACTCATGAGGCTCATCCCTGAATGACGGTGCGTTGCCTAAGACCGTATTCGCATGGATGAAGGCTGTAAAAGGCTTTT  >  AE015451/3662663‑3662896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.