New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3718735 =	64 (0.930)	7 (0.110)	6/320	NT	10.8%	coding (666/774 nt)	paaF	enoyl‑CoA hydratase‑isomerase
	?	AE015451	3718802 =	55 (0.850)					coding (599/774 nt)	paaF	enoyl‑CoA hydratase‑isomerase

GGCACCCAGCGCCTGTTACGTGCCGTCGGTAAGCCGTTGGCCATGCAGATGGTGCTGACGGGGGAAGCCATCACTGCCCTCCGCGCCCAGCAGGCCGGCCTGGTCAGCGAAATCACCCAGCCCGAACTCACCGTAGAACGCGCCATGCAGGTTGCCCGCAGCATCGCCGCCAAAGCGCCGCTGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGCCAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3718977‑3718735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcggcGCTTTGGCGGCGATGCTGCGGGCAACCTGCATGGCGCGTTCTACGGTGAGTTCGGGCTGGGTGATTTCGCTGACCAGGCCGGCCTGCTGGGCGCGGAGGGCAGTGATGGCTTCCCCCGTCAGCACCATCTGCATGGCCAACGGCTTACCGACGGCACGTAACAGGCGCTGGGTGCCGCCAGCACCGGGGATGATGCCAAGGTTGATTTCCGGCTGGCCGAAACGGGCGTCGGT  >  AE015451/3718802‑3719034                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGCACCCAGCGCCTGTTACGTGCCGTCGGTAAGCCGTTGGCCATGCAGATGGTGCTGACGGGGGAAGCCATCACTGCCCTCCGCGCCCAGCAGGCCGGCCTGGTCAGCGAAATCACCCAGCCCGAACTCACCGTAGAACGCGCCATGCAGGTTGCCCGCAGCATCGCCGCCAAAGCGCCGCTGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGC                                                                                                                                                                                                                                                  <  1:1237983/236‑1  GCACCCAGCGCCTGTTACGTGCCGTCGGTAAGCCGTTGGCCATGCAGATGGTGCTGACGGGGGAAGCCATCACTGCCCTCCGCGCCCAGCAGGCCGGCCTGGTCAGCGAAATCACCCAGCCCGAACTCACCGTAGAACGCGCCATGCAGGTTGCCCGCAGCATCGCCGCCAAAGCGCCGCTGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGC                                                                                                                                                                                                                                                  >  1:1145332/1‑235       CAGCGCCTGTTACGTGCCGTCGGTAAGCCGTTGGCCATGCAGATGGTGCTGACGGGGGAAGCCATCACTGCCCTCCGCGCCCAGCAGGCCGGCCTGGTCAGCGAAATCACCCAGCCCGAACTCACCGTAGAACGCGCCATGCAGGTTGCCCGCAGCATCGCCGCCAAAGCGCCGCTGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGCCAGCGG                                                                                                                                                                                                                                            >  1:1271777/1‑236       CAGCGCCTGTTACGTGCCGTCGGTAAGCCGTTGGCCATGCAGATGGTGCTGACGGGGGAAGCCATCACTGCCCTCCGCGCCCAGCAGGCCGGCCTGGTCAGCGAAATCACCCAGCCCGAACTCACCGTAGAACGCGCCATGCAGGTTGCCCGCAGCATCGCCGCCAAAGCGCCGCTGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGCCAGCG                                                                                                                                                                                                                                             <  2:872811/235‑1                                           ATGCAGATGGTGCTGACGGGGGAAGCCATCACTGCCCTCCGCGCCCAGCAGGCCGGCCTGGTCAGCGAAATCACCCAGCCCGAACTCACCGTAGAACGCGCCATGCAGGTTGCCCGCAGCATCGCCGCCAAAGCGCCGCTGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGCCAGCGGCGCTTTGGCGGCGA                                                                                                                                                                                                                              >  2:1223319/1‑214                                                  TGGTGCTGACGGGGGAAGCCATCACTGCCCTCCGCGCCCAGCAGGCCGGCCTGGTCAGCGAAATCACCCAGCCCGAACTCACCGTAGAACGCGCCATGCAGGTTGCCCGCAGCATCGCCGCCAAAGCGCCGCTGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGCC                                                                                                                                                                                                                                                 <  1:1035722/188‑1                                                                                TCCGCGCCCAGCAGGCCGGCCTGGTCAGCGAAATCACCCAGCCCGAACTCACCGGAGAACGCGCCATGCAGGTTGCCCGCAGCATCGCCGCCAAAGCGCCGCTGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGCCAGCG                                                                                                                                                                                                                                             <  1:489385/162‑1                                                                                                     TGGTCAGCGAAATCACCCAGCCCGAACTCACCGTAGAACGCGCCATGCAGGTTGCCCGCAGCATCGCCGCCAAAGCGCCGCTGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGCCAGCGGCGCTTTGGCGGCGATGCTGCGGGCAACCTGCAT                                                                                                                                                                                                           <  1:1223322/175‑1                                                                                                                             AACTCACCGTAGAACGCGCCATGCAGGTTGCCCGCAGCATCGCCGCCAAAGCGCCGCTGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGCCAGCGGCGCTTTGGCGGCGATGCTGCGGGCAACCTGCAT                                                                                                                                                                                                           <  1:1183390/151‑1                                                                                                                                      TAGAACGCGCCATGCAGGTTGCCCGCAGCATCGCCGCCAAAGCGCCGCTGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGCCAGCGG                                                                                                                                                                                                                                            >  2:185376/1‑109                                                                                                                                                                                      TGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGCCAGCGGCGCTTTGGCGGCGATGCTGCGGGCAACCTGCATGGCGCGTTCTAC                                                                                                                                                                                               <  1:1044405/106‑1                                                                                                                                                                                                    GCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGCCAGCGGCGCTTTGGCGGCGATGCTGCGGGCAACCTGCATGGCGCGTTCTACGGTGAGTTCGGGCTGGGTGATTTCGCTGACCAGGCCGGCCTGCTGGGCGCGGAGGGCAGTGATGGCTTCCCCCGTCAGCACCATCTGCATGGCCAACGGCTTACCGACGGCACGTAACAGGCGCTGGGTGCCGCCAGCACCGGG                                               <  1:969392/236‑1                                                                                                                                                                                                       AAGGCGGCGTTACTGAAGGCCGGTGATACCGACCTGGCCAGCGGCGCTTTGGCGGCGATGCTGCGGGCAACCTGC                                                                                                                                                                                                             <  2:196396/75‑1                                                                                                                                                                                                                                 tgcgGACCGGGCCAGCGGGGCGTCGGCGTCGATGCTGCGGGCAACCTGCATGGCGCGTTCTACGGTGAGTTCGGGCTGGGTGATTTCGCTGACCAGG                                                                                                                                                             <  1:1096007/93‑1                                                                                                                                                                                                                                             CAGCGGCGCTTTGGCGGCGATGCTGCGGGCAACCTGCATGGCGCGTTCTACGGTGAGTTCGGGCTGGGTGATTTCGCTGACCAGGCCGGCCTGCTGGGCGCGGAGGGCAGTGATGGCTTCCCCCGTCAGCACCATCTGCATGGCCAACGGCTTACCGACGGCACGTAACAGGCGCTGGGTGCCGCCAGCACCGGGGATGATGCCAAGGTTGATTTCCGGCTGGCCGAAACGGGC        >  2:753938/1‑234                                                                                                                                                                                                                                               GCGGCGCTTTGGCGGCGATGCTGCGGGCAACCTGCATGGCGCGTTCTACGGTGAGTTCGGGCTGGGTGATTTCGCTGACCAGGCCGGCCTGCTGGGCGCGGAGGGCAGTGATGGCTTCCCCCGTCAGCACCATCTGCATGGCCAACG                                                                                             <  1:297884/147‑1                                                                                                                                                                                                                                                 GGCGCTTTGGCGGCGATGCTGCGGGCAACCTGCATGGCGCGTTCTACGGTGAGTTCGGGCTGGGTGATTTCGCTGACCAGGCCGGCCTGCTGGGCGCGGAGGGCAGTGATGGCTTCCCCCGTCAGCACCATCTGCATGGCCAACGGCTTACCGACGGCACGTAACAGGCGCTGGGTGCCGCCAGCACCGGGGATGATGCCAAGGTTGATTTCCGGCTGGCCGAAACGGGCGTCGGT  >  1:794228/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGCACCCAGCGCCTGTTACGTGCCGTCGGTAAGCCGTTGGCCATGCAGATGGTGCTGACGGGGGAAGCCATCACTGCCCTCCGCGCCCAGCAGGCCGGCCTGGTCAGCGAAATCACCCAGCCCGAACTCACCGTAGAACGCGCCATGCAGGTTGCCCGCAGCATCGCCGCCAAAGCGCCGCTGGCTGTGCGCCTGGCCAAGGAGGCGTTACTGAAGGCCGGTGATACCGACCTGGCCAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3718977‑3718735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcggcGCTTTGGCGGCGATGCTGCGGGCAACCTGCATGGCGCGTTCTACGGTGAGTTCGGGCTGGGTGATTTCGCTGACCAGGCCGGCCTGCTGGGCGCGGAGGGCAGTGATGGCTTCCCCCGTCAGCACCATCTGCATGGCCAACGGCTTACCGACGGCACGTAACAGGCGCTGGGTGCCGCCAGCACCGGGGATGATGCCAAGGTTGATTTCCGGCTGGCCGAAACGGGCGTCGGT  >  AE015451/3718802‑3719034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.