New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3862642	69 (1.010)	4 (0.060)	4/318	NT	5.3%	coding (1565/3282 nt)	PP_3413	Sensor histidine kinase/response regulator
	?	AE015451	= 3862691	77 (1.190)					coding (1614/3282 nt)	PP_3413	Sensor histidine kinase/response regulator

GAGCAGCCATATCAATGCTGCCTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3862436‑3862642 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccagcacCTGCAAAGCCAGGGTGCGGTAGTCGCGCCAGGGGCTGTCGCTCACCAGTGTGCTGGTGCGCCAGCGGTTGATCAACTGGTCCAGTTCTTCAGGTGGAATGCTTAGCAGCGCCTTGTCGAGAATGGCCTGCAATTGGGGCTGGTCGGCGGCTACGGCAAAGGCGGCAATGGCCGGAGCGTCGTCGAGCATGTTGGCGATGCGCAAACGGTCCTTGAACACATGGCTGATGTA  <  AE015451/3862691‑3862461                                                                                                                                                                                                                                                                                                                                                                                                                                                        gcGCAGCCATATCAATGCTGCCTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACCTGCAAAGCCAGGGTGCGGT                                                                                                                                                                                                                     <  2:973331/225‑1   GCAGCCATATCAATGCTGCCTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCG                                                                                                                                                                                                                                                  <  2:1230369/196‑1                          tcCATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCACGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCA                                                                                                                                                                                                                                          <  1:290899/179‑1                                            AAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACCTGCAAAGCCAGGGTGCGGTAGTCGCGCCAGGGGCTGTCGCTCA                                                                                                                                                                                             <  1:1130547/208‑1                                            AAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACCTGCAAAGCCAGGGTGCGGTAGTCGCGCCAGGGGCTGTCGCTCA                                                                                                                                                                                             >  2:1130544/1‑208                                                                          GACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCG                                                                                                                                                                                                                                                  <  1:453951/125‑1                                                                          GACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCG                                                                                                                                                                                                                                                  >  2:453948/1‑125                                                                                                                                    CCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACCTGCAAAGCCAGGGTGCGGTAGTCGCGCCAGGGGCTGTCGCTCACCAGTGTGCAGGTGCGCCAGTGGTTGATCAACTGGT                                                                                                                                                         >  2:526890/1‑156                                                                                                                                                                                                          CAGCACCTGCAAAGCCAGGGTGCGGTAGTCGCGCCAGGGGCTGTCGCTCACCA                                                                                                                                                                                          <  1:228575/53‑1                                                                                                                                                                                                           AGCACCTGCAAAGCCAGGGTGCGGTAGTCGCGCCAGGGGCTGTCGCTCACCAGTGTGCTGGTGCGCCAGCGGTTGATCAACTGGTCCAGTTCTTCAGGTGGAATGCTTAGCAGCGCCTTGTCGAGAATGGCCTGCAATTGGGGCTGGTCGGCGGCTACGGCAAAGGCGGCAATGGCCGGAGCGTCGTCGAGCATGTTGGCGATGCGCAAACGGTCCTTGAACACATGGCTGATGTA  >  1:250468/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAGCAGCCATATCAATGCTGCCTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3862436‑3862642 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccagcacCTGCAAAGCCAGGGTGCGGTAGTCGCGCCAGGGGCTGTCGCTCACCAGTGTGCTGGTGCGCCAGCGGTTGATCAACTGGTCCAGTTCTTCAGGTGGAATGCTTAGCAGCGCCTTGTCGAGAATGGCCTGCAATTGGGGCTGGTCGGCGGCTACGGCAAAGGCGGCAATGGCCGGAGCGTCGTCGAGCATGTTGGCGATGCGCAAACGGTCCTTGAACACATGGCTGATGTA  <  AE015451/3862691‑3862461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.