New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3862642	69 (1.010)	4 (0.060)	4/318	NT	5.3%	coding (1565/3282 nt)	PP_3413	Sensor histidine kinase/response regulator
	?	AE015451	= 3862691	77 (1.190)					coding (1614/3282 nt)	PP_3413	Sensor histidine kinase/response regulator

GAGCAGCCATATCAATGCTGCCTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGC  >  AE015451/3862436‑3862877                                                                                                                                                                                                               |                                                                                                                                                                                                                                            gcgcagccaTATCAATGCTGCCTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACctgcaaagccagggtgcggt                                                                                                                                                                                                                         <  2:973331‑M1/225‑21 (MQ=255)       ccATATCAATGCTGCCTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGc                                                                                                                                                                                                           <  1:325102/235‑1 (MQ=255)          tatCAATGCTGCCTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCg                                                                                                                                                                                                                                  >  2:571374/1‑209 (MQ=255)          tatCAATGCTGCCTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAg                                                                                                                                                                                                                              >  2:969085/1‑213 (MQ=255)            tCAATGCTGCCTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGAc                                                                                                                                                                                                                 <  1:1006611/224‑1 (MQ=255)               aTGCTGCCTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGc                                                                                                                                                                                                                                   >  2:1068120/1‑203 (MQ=255)                     ccTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCg                                                                                                                                                                                                                                  >  2:1078412/1‑198 (MQ=255)                        aTTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTg                                                                                                                                                                                                     >  1:875182/1‑224 (MQ=255)                        aTTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACAACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTgg                                                                                                                                                                                                                       <  1:1210158/206‑1 (MQ=255)                          tACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGgtgct                                                                                                                                                                                       >  1:250468‑M2/1‑231 (MQ=255)                               cAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTgg                                                                                                                                                                                                                                        >  2:439157/1‑182 (MQ=255)                                 gCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGc                                                                                                                                                                                                   <  2:691198/217‑1 (MQ=255)                                  ccATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGCCGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGt                                                                                                                                                                               <  1:291895/236‑1 (MQ=255)                                  ccATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGt                                                                                                                                                                               >  1:284972/1‑236 (MQ=255)                                    aTGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCTGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCt                                                                                                                                                                                                  >  1:659929/1‑215 (MQ=255)                                    aTGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTc                                                                                                                                                                              >  2:621931/1‑235 (MQ=255)                                         ttCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCCGGTGCTGGTGCTGTCgg                                                                                                                                                                            >  2:991206/1‑232 (MQ=255)                                         ttCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGcc                                                                                                                                                                          >  2:1126870/1‑234 (MQ=255)                                            aaGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACctgcaaagccagggtgcggtagtcgcgccaggggctgtcgctca                                                                                                                                                                                                 >  2:1130544‑M1/1‑164 (MQ=255)                                            aaGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACctgcaaagccagggtgcggtagtcgcgccaggggctgtcgctca                                                                                                                                                                                                 <  1:1130547‑M1/208‑45 (MQ=255)                                               gACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTg                                                                                                                                                                                               >  1:365296/1‑207 (MQ=255)                                                      tGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCg                                                                                                                                                                                                            >  2:819418/1‑187 (MQ=255)                                                      tGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGcc                                                                                                                                                              >  2:652258/1‑233 (MQ=255)                                                      tGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCggg                                                                                                                                                           <  1:571377/236‑1 (MQ=255)                                                      tGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCggg                                                                                                                                                           <  1:652261/236‑1 (MQ=255)                                                        cgcATCGCCAACAAGCTCGACGACGCTCCGACCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCgggg                                                                                                                                                          <  1:972450/235‑1 (MQ=255)                                                              gCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCctg                                                                                                                                                                       <  2:1147702/216‑1 (MQ=255)                                                                     tGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAg                                                                                                                                                                                                                                    <  2:24389/148‑1 (MQ=255)                                                                        tCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGt                                                                                                                                         <  1:242408/236‑1 (MQ=255)                                                                        tCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGt                                                                                                                                         <  1:1164603/236‑1 (MQ=255)                                                                          gacgccGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCgggg                                                                                                                                                          <  2:1094133/217‑1 (MQ=255)                                                                                 cTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCa                                                                                                                                                                                             >  2:591994/1‑175 (MQ=255)                                                                                  tCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGggtg                                                                                                                                                        >  2:826906/1‑211 (MQ=255)                                                                                          ttGCCGCCTTTGCCGTAGCCGCCGCCCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCg                                                                                                                                                             <  2:172287/198‑1 (MQ=255)                                                                                             ccgccTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTGGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCggg                                                                                                                                                           <  1:298993/197‑1 (MQ=255)                                                                                               gccTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCa                                                                                                                  <  1:1233119/236‑1 (MQ=255)                                                                                                       cGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCAc                                                                                                            >  2:1090425/1‑234 (MQ=255)                                                                                                                 gACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCa                                                                                                <  1:819421/236‑1 (MQ=255)                                                                                                                          cAATTGCATGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCa                                                                                       <  1:888090/236‑1 (MQ=255)                                                                                                                            aTTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAg                                                                                      <  1:621934/235‑1 (MQ=255)                                                                                                                              tGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCa                                                                                                                  <  1:932038/205‑1 (MQ=255)                                                                                                                               gCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGAACCCTGGCTTTGCAGGTCCTGGTGCTGTCGGACCAGCCGCTTGCCg                                                                                                                                                             >  2:1283127/1‑161 (MQ=255)                                                                                                                                  ggCCATTCTCGACAAGGCGCTGCTAAGCATTCCCCCTGAAGACCTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGCCAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGcac                                                                                  <  1:259238/233‑1 (MQ=255)                                                                                                                                    ccATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACctgcaaagccagggtgcggtagtcgcgccaggggctgtcgctcaccagtgtgcaggtgcgccagtggttgatcaactggt                                                                                                                                                             >  2:526890‑M1/1‑76 (MQ=255)                                                                                                                                    ccATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTAcc                                                                                                                                     >  2:490013/1‑180 (MQ=255)                                                                                                                                     cATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTgg                                                                                                                                               >  2:724405/1‑169 (MQ=255)                                                                                                                                     cATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTcg                                                                            >  1:488466/1‑236 (MQ=255)                                                                                                                                          tcGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCa                                                                                       <  1:1247964/220‑1 (MQ=255)                                                                                                                                               aaGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGcc                                                                   <  1:1126873/235‑1 (MQ=255)                                                                                                                                                cggCGCTGCTAAGCATTCCCCCTGAAGAACTGGACCAGTTGAGCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTTCCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCggg                                                                                                                                                           <  2:131288/145‑1 (MQ=255)                                                                                                                                                aGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGcaca                                                                                 >  2:471522/1‑220 (MQ=255)                                                                                                                                                    gctgctAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAg                                                                                                        >  2:141981/1‑193 (MQ=255)                                                                                                                                                    gctgctAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCt                                                                              >  2:123991/1‑219 (MQ=255)                                                                                                                                                    gctgctAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCggg                                                              <  1:1090428/235‑1 (MQ=255)                                                                                                                                                    gctgctAAGAATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCg                                                                                                                                                             >  2:111709/1‑140 (MQ=255)                                                                                                                                                         gaaGCATGCCCCCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACCGTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGtt                                                                                                                                                   <  2:45943/144‑1 (MQ=255)                                                                                                                                                               ttCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGcaca                                                                                                   <  1:1241160/187‑1 (MQ=255)                                                                                                                                                                tCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAg                                                                                                                                                                                            >  1:1109104/1‑97 (MQ=255)                                                                                                                                                                tCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAg                                                                                                                                                                                            <  2:1109101/97‑1 (MQ=255)                                                                                                                                                                   aCCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTa                                               >  2:982453/1‑235 (MQ=255)                                                                                                                                                                   aCCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTAc                                              <  1:141981/236‑1 (MQ=255)                                                                                                                                                                     cTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAgg                                                                                                       >  1:162746/1‑177 (MQ=255)                                                                                                                                                                     cTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGc                                            >  1:1242903/1‑236 (MQ=255)                                                                                                                                                                              tGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCa                                                                                                <  2:921300/175‑1 (MQ=255)                                                                                                                                                                                gACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAgg                                  >  1:1220257/1‑235 (MQ=255)                                                                                                                                                                                 aCCAGTTGATCAACCACTGGCGCACCTGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGgtgctggtgcgccagcggttgatcaactggtccagttcttcaggtggaatgcttagcagcgccttgtcgagaatgg                                                                                                                >  2:526890‑M2/1‑80 (MQ=255)                                                                                                                                                                                      ttGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGc                           <  1:123991/236‑1 (MQ=255)                                                                                                                                                                                        gATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGaa                                                                                                                                             >  2:47558/1‑120 (MQ=255)                                                                                                                                                                                          tCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGgctgct                                                         <  2:488463/202‑1 (MQ=255)                                                                                                                                                                                              ccGCGGGCGAACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCaa                                    <  1:17907/219‑1 (MQ=255)                                                                                                                                                                                                  tGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGTCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGgcca                <  1:768767/235‑1 (MQ=255)                                                                                                                                                                                                   ggCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACTGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCCTCAGGcaca                                                                                 >  2:318191/1‑169 (MQ=255)                                                                                                                                                                                                   ggCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGggcggt                                                                                                                                                      >  2:278526/1‑100 (MQ=255)                                                                                                                                                                                                      gcACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCgg                                                                                                                                                                            <  2:1037994/75‑1 (MQ=255)                                                                                                                                                                                                      gcACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCgg                                                                                                                                                                            >  1:1037997/1‑75 (MQ=255)                                                                                                                                                                                                        aCCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGAc         <  1:982456/236‑1 (MQ=255)                                                                                                                                                                                                          cAGCACctgcaaagccagggtgcggtagtcgcgccaggggctgtcgctcacca                                                                                                                                                                                              <  1:228575‑M1/53‑48 (MQ=255)                                                                                                                                                                                                           aGCACctgcaaagccagggtgcggtagtcgcgccaggggctgtcgctcaccagtgtgctggtgcgccagcggttgatcaactggtccagttcttcaggtggaatgcttagcagcgccttgtcgagaatggcctgcaattggggctggtcggcggctacggcaaaggcggcaatggccggagcgtcgtcgagcatgttggcgatgcgcaaacggtccttgaacacatggctgatgta      >  1:250468‑M1/1‑5 (MQ=255)                                                                                                                                                                                                           aGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCCAGGACGATGc                           >  2:953619/1‑215 (MQ=255)                                                                                                                                                                                                               cacTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGc  <  1:826909/236‑1 (MQ=255)                                                                                                                                                                                                               |                                                                                                                                                                                                                                            GAGCAGCCATATCAATGCTGCCTATTACATCAGCCATGTGTTCAAGGACCGTTTGCGCATCGCCAACATGCTCGACGACGCTCCGGCCATTGCCGCCTTTGCCGTAGCCGCCGACCAGCCCCAATTGCAGGCCATTCTCGACAAGGCGCTGCTAAGCATTCCACCTGAAGAACTGGACCAGTTGATCAACCGCTGGCGCACCAGCACACTGGTGAGCGACAGCCCCTGGCGCGACTACCGCACCCTGGCTTTGCAGGTGCTGGTGCTGTCGGCCCTGCTGCTGGCCGGGGTGGTGTTCTGGAACAGTTACCTGCGCAAGCTGATCAACCAGCGCACCGAGGCACAGCACGCGCTTCAGGCACAGCTCGCGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGC  >  AE015451/3862436‑3862877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.