New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3914323	71 (1.030)	5 (0.080)	3/324	NT	7.2%	coding (464/702 nt)	PP_3454	putative transcriptional regulatory protein
	?	AE015451	= 3914401	61 (0.930)					coding (386/702 nt)	PP_3454	putative transcriptional regulatory protein

AGCACTCCCACTCGACACGGCTGAACAGGTAGCCCTTGCCCCACACGGTCTTGATCTTGCGCGCTTCGCCGGCGTTGTCGTCGAACTTGCGCCGCAGTTTGGAAATGGCCACGTCAACGGAGCGATCGGTGCCATTGAACTCGATGCCACGCAGCTGTTGCAGGATACGGTCGCGGTTCATCACCTCACCAGCATTGCGCGCCAGCACCACCAGCAGGTTGTACTCACCGCTGGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3914087‑3914323 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggacaACGACCTGATCCTGATTGGTGGCCTGCGTATCGACCTGGCCGAGCGCACGGTGAGTTGGCGCGGCGAGGAGGTGGAGCTGTCCAGCGGTGAGTACAACCTGCTGGTGGTGCTGGCGCGCAATGCTGGTGAGGTGATGAACCGCGACCGTATCCTGCAACAGCTGCGTGGC  <  AE015451/3914401‑3914232                                                                                                                                                                                                                                                                                                                                                                                                                         AGCACCCCCACGCGACACGGCTGAACAGGTAGCCCTTGCCCCACACGGTCTTGATCTTGCGCGCTTCGCCGGCGTTGTCGTCGAACTTGCGCCGCAGTTTGGAAATGGCCACGTCAACGGAGCGATCGGTGCCATTGAACTCGATGCCACGCAGCTGTTGCAGGATACGGTCGCGGTTCATCACCTCACCAGCATTGCGCGCCAGCACCACCAGCAGGTTGTACTCACCGCTG                                                                                                                                                                                <  1:882602/233‑1                                                                CTTCGCCGGCGTTGTCGTCGAACTTGCGCCGCAGTTTGGAAATGGCCACGTCAACGGAGCGATCGGTGCCATTGAACTCGATGCCACGCAGCTGTTGCAGGATACGGTCGCGGTTCATCACCTCACCAGCATTGCGCGCCAGCACCACCAGCAGGTTGTACTCACCGCTGG                                                                                                                                                                               <  1:65855/171‑1                                                                  TCGCCGGCGTTGTCGTCGAACTTGCGCCGCAGTTTGGAAATGGCCACGTCAACGGAGCGATCGGTGCCATTGAACTCGATGCCACGCAGCTGTTGCAGGATACGGTCGCGGTTCATCACCTCACCAGCATTGCGCGCCAGCACCACCAGCAGGTTGTACTCACCGCTGGACAACGACCTGATCCTGATTGGTGGCCTGCGTATCGACCTGGCCGAGCGCACGGTGAGTTGGCGCGG                                                                                                            <  1:396962/236‑1                                                                                                           GGCCACGTCAACGGAGCGATCGGTGCCATTGACCTCGATGCCACGCAGCTGTTGCAGGATACGGTCGCGGTTCATCACCTCACCAGCATTGCGCGCCAGCACCACCAGCAGGTTGTACTCACCGCT                                                                                                                                                                                 <  2:309057/126‑1                                                                                                            GCCACGTCAACGGAGCGATCGGTGCCATTGAACTCGATGCCACGCAGCTGTTGCAGGATACGGTCGCGGTTCATCACCTCACCAGCATTGCGCGCCAGCACCACCAGCAGGTTGTACTCACCGCTGGACAACGACCTGATCCTGATTGGTGGCCTGCGTATCGACCTGGCCGAGCGCACGGTGAGTTGGCGCGG                                                                                                            <  2:972554/194‑1                                                                                                               ACGTCAACGGAGCGATCGGTGCCATTGAACTCGATGCCACGCAGCTGTTGCAGGATACGGTCGCGGTTCATCACCTCACCAGCATTGCGCGCCAGCACCACCAGCAGGTTGTACTCACCGCTGGACAACGACCTGATCCTGATTGGTGGCCTGCGTATC                                                                                                                                            >  1:612987/1‑159                                                                                                               ACGTCAACGGAGCGATCGGTGCCATTGAACTCGATGCCACGCAGCTGTTGCAGGATACGGTCGCGGTTCATCACCTCACCAGCATTGCGCGCCAGCACCACCAGCAGGTTGTACTCACCGCTGGACAACGACCTGATCCTGATTGGTGGCCTGCGTATC                                                                                                                                            <  2:612984/159‑1                                                                                                                                                                                                                        AGGTTGTACTCACCGCCGGACAACGCCCTGATCCTGATTGGTGGCCTGCGTATCGACCTGGCCGAGCGCACGGTGAGTTGGCGCGG                                                                                                            <  2:1219850/86‑1                                                                                                                                                                                                                                        TGGACAACGACCTGATCCTGATTGGTGGCCTGCGTATCGACCTGGCCGAGCGCACGGTGAGTTGGCGCGGCGAGGAGGTGGAGCTGTCCAGCGGTGAGTACAACCTGCTGGTGGTGCTGGCGCGCAATGCTGGTGAGGTGATGAACCGCGACCGTATCCTGCAACAGCTGCGTG    <  2:1151875/174‑1                                                                                                                                                                                                                                         GGACAACGACCTGATCCTGATTGGTGGCCTGCGTATCGACCTGGCCGAGCGCACGGTGAGTTGGCGCGGCGAGGGGGTGGAGCTGTCCAGCGGAGAGTACA                                                                            >  1:378914/1‑101                                                                                                                                                                                                                                             AACGACCTGAAGCTGATAGGTGGCCTGCGTATCGACCTGGCCGAGCGCACGGTGAGTTGGCGCGGCGAGGAGGTGGAGCTGTCCAGCGGTGAGTACATCCTGCTGGTGGTGCTGGCGCGCAATGCTGGTGAGGTGATGAACCGCGACCGTATCCTGCAACAGCTGCGTGGC  <  1:273501/171‑1                                                                                                                                                                                                                                                                                                                                                                                                                         AGCACTCCCACTCGACACGGCTGAACAGGTAGCCCTTGCCCCACACGGTCTTGATCTTGCGCGCTTCGCCGGCGTTGTCGTCGAACTTGCGCCGCAGTTTGGAAATGGCCACGTCAACGGAGCGATCGGTGCCATTGAACTCGATGCCACGCAGCTGTTGCAGGATACGGTCGCGGTTCATCACCTCACCAGCATTGCGCGCCAGCACCACCAGCAGGTTGTACTCACCGCTGGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3914087‑3914323 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggacaACGACCTGATCCTGATTGGTGGCCTGCGTATCGACCTGGCCGAGCGCACGGTGAGTTGGCGCGGCGAGGAGGTGGAGCTGTCCAGCGGTGAGTACAACCTGCTGGTGGTGCTGGCGCGCAATGCTGGTGAGGTGATGAACCGCGACCGTATCCTGCAACAGCTGCGTGGC  <  AE015451/3914401‑3914232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.