New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3972968 =	14 (0.200)	4 (0.060)	4/324	NT	20.3%	intergenic (+6/+179)	PP_3502/PP_3503	transposase/Sigma‑54 dependent transcriptional regulator
	?	AE015451	5220089 =	18 (0.270)					intergenic (+23/+126)	PP_4599/moaB‑II	transposase/molybdenum cofactor biosynthesis protein B

TGCTGGGCATTTCACGGCCGACGTTCTATCGGTTGTTGCACAAGCACCAGATACGCTGAGCGGCGCTCTCAAAGGGAAACCACAAGCCCCTGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3973205‑3972968 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcccGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGCCCG  >  AE015451/5220089‑5220321                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGCTGGGCATTTCACGGCCGACGTTCTATCGGTTGTTGCACAAGCACCAGATACGCTGAGCGGCGCTCTCAAAGGGAAACCACAAGCCCCTGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGC                                                                                                                                                                                                                                             <  1:309817/236‑1  GCTGGGCATTTCACGGCCGACGTTCTATCGGTTGTTGCACAAGCACCAGATACGCTGAGCGGCGCTCTCAAAGGGAAACCACAAGCCCCTGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCA                                                                                                                                                                                                                                               <  2:823007/233‑1            TCACGGCCGACGTTCTATCGGTTGTTGCACAAGCACCAGATACGCTGAGCGGCGCTCTCAAAGGGAAACCACAAGCCCCTGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCGCCCAAACT                                                                                                                                                                                                                                  <  1:464203/236‑1                                                                                            GTAGGAGATTCTATGGCCGGAGGCAAAGTTGCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGGCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCC                                                                                                                                                                                                                                            >  2:844467/1‑146                                                                                                        ATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTG                                                                                                                                                                                                                                                 >  1:357152/1‑129                                                                                                                              TAAAACCGCCCTCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTA                                                                                                                                                                               <  1:381966/173‑1                                                                                                                                    CGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCGCCC                                                                                                                                                                                                                                       <  2:67750/111‑1                                                                                                                                                                GGTAAGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCGCCCAAACTGACGGGCAGTATCAAATGCCGGGGAGAA                                                                                                                                                                                                      >  2:1169124/1‑116                                                                                                                                                                                              CCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCG                                                                                                                                                                                 >  2:1282073/1‑107                                                                                                                                                                                                                                        GCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGT                                                                    >  2:985162/1‑174                                                                                                                                                                                                                                        GCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGT                                                                    <  1:985165/174‑1                                                                                                                                                                                                                                            CCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCga                                                        >  2:599693/1‑180                                                                                                                                                                                                                                            CCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGCCCG  <  1:442572/236‑1                                                                                                                                                                                                                                             CCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATCCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCC                                                                                                                       <  2:1134054/118‑1                                                                                                                                                                                                                                             CCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATCCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCC                                                                                                                       >  1:1134057/1‑118                                                                                                                                                                                                                                             CCGACCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGA                                                                                                                                                                                     <  2:827101/56‑1                                                                                                                                                                                                                                              CGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGCCC   <  2:1126038/233‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGCTGGGCATTTCACGGCCGACGTTCTATCGGTTGTTGCACAAGCACCAGATACGCTGAGCGGCGCTCTCAAAGGGAAACCACAAGCCCCTGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3973205‑3972968 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcccGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGCCCG  >  AE015451/5220089‑5220321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.