New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 3972968 = | 14 (0.200) | 4 (0.060) | 4/324 | NT | 20.3% | intergenic (+6/+179) | PP_3502/PP_3503 | transposase/Sigma‑54 dependent transcriptional regulator |
? | AE015451 | 5220089 = | 18 (0.270) | intergenic (+23/+126) | PP_4599/moaB‑II | transposase/molybdenum cofactor biosynthesis protein B |
ACTCCTGTACAACGCCTCGATGAGCGGCAGTCGAACCGCGACCTGGAAGCAGTATTACGCCCATCACCAAGCCCGGGGGAAGAAAACCACTCAAGCCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGCCCG > AE015451/5219862‑5220321 | tcacggccgacgttctatcggttgttgcacaagcaccagatacgctgagcggcgctctcaaagggaaaccacaagcccctgtaggagattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcgttgcagcccGCCCAAACt < 1:464203‑M2/9‑1 (MQ=255) taaaaccgccctcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcgttgcagcccGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTa < 1:381966‑M2/60‑1 (MQ=255) cgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcgttgcagcccgccc < 2:67750‑M2/4‑1 (MQ=255) ggtaagagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcgttgcagcccGCCCAAACTGACGGGCAGTATCAAATGCCGGGGAGaa > 2:1169124‑M2/80‑116 (MQ=255) ccGACTGGAAGCCCGAGCTATATACCGGAGGTGCAAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATgg < 1:578890/234‑1 (MQ=255) ccGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCa > 1:749690/1‑231 (MQ=255) ccGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCa > 1:888690/1‑235 (MQ=255) cccagcattggatactgcccgtcagtttgggcgggctgcgttgcagcccGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCg > 2:1282073‑M2/50‑107 (MQ=255) gtaccAATCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCCGTATCCAATGCTGGGGAGAAATTCCCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGc > 2:1267278/4‑178 (MQ=12) gTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTg > 1:859901/1‑199 (MQ=255) gTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACGCGTACCTCGAGGTTGCGGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATc > 1:587619/1‑175 (MQ=11) tGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCg > 2:572051/1‑212 (MQ=255) tGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGa > 2:649347/1‑234 (MQ=255) tGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAAt > 1:1226752/1‑236 (MQ=255) ccAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGc > 1:698852/1‑236 (MQ=255) ccAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGc > 1:121983/1‑236 (MQ=255) ccAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGGTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCa > 2:522871/1‑198 (MQ=255) aaGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAgg > 1:282214/1‑191 (MQ=255) aGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGc > 2:805023/1‑233 (MQ=255) aGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGCCTTCCCa > 1:594507/1‑232 (MQ=255) ggCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGt < 2:834650/189‑1 (MQ=255) gCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAgc < 2:883474/202‑1 (MQ=255) cTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCt > 2:661044/1‑234 (MQ=255) aCGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGCCTTCCCAgg < 2:529909/215‑1 (MQ=255) cGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGTAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGa < 1:503213/236‑1 (MQ=255) gcagcccGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGt > 2:985162‑M2/8‑174 (MQ=255) gcagcccGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGt < 1:985165‑M2/167‑1 (MQ=255) cccGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCatcga > 2:599693‑M2/4‑180 (MQ=255) cccGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGCCCg < 1:442572‑M2/233‑1 (MQ=255) ccGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATCCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGcc < 2:1134054‑M2/116‑1 (MQ=255) ccGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATCCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGcc > 1:1134057‑M2/3‑118 (MQ=255) ccGACCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGa < 2:827101‑M2/54‑1 (MQ=255) cGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGccc < 2:1126038‑M2/232‑1 (MQ=255) gcccAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCa > 1:335473/1‑191 (MQ=255) | ACTCCTGTACAACGCCTCGATGAGCGGCAGTCGAACCGCGACCTGGAAGCAGTATTACGCCCATCACCAAGCCCGGGGGAAGAAAACCACTCAAGCCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACATCGGCAACAGGTGTTTGACGAAGTTGCATGGCCGGTGCCGTGCATCCAGCTGCTCGGCCAGAATGCCTTCCCAGGCGGTGCGGCAGGCTCCGGTCGAGCCCG > AE015451/5219862‑5220321 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |