New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3972968 =	14 (0.200)	4 (0.060)	4/324	NT	20.3%	intergenic (+6/+179)	PP_3502/PP_3503	transposase/Sigma‑54 dependent transcriptional regulator
	?	AE015451	5220089 =	18 (0.270)					intergenic (+23/+126)	PP_4599/moaB‑II	transposase/molybdenum cofactor biosynthesis protein B

CGCGGAGACTCGGAGGTCCGTAGACTCCTGTACAACGCCTCGATGAGCGGCAGTCGAACCGCGACCTGGAAGCAGTATTACGCCCATCACCAAGCCCGGGGGAAGAAAACCACTCAAGCCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGCGCCGCTCAGCGTATCTGGTGCTTGTGCAACAACCGATAGAACGTCGGCCGTGA  >  AE015451/3972735‑3973194                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                   cgggctcgaccggagcctgccgcaccgcctgggaaggcattctggccgagcagctggatgcacggcaccggccatgcaacttcgtcaaacacctgttgccgatgtaggagattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcggg                                                                                                                                                                                                                                  <  1:442572‑M1/3‑1 (MQ=255)  gggctcgaccggagcctgccgcaccgcctgggaaggcattctggccgagcagctggatgcacggcaccggccatgcaacttcgtcaaacacctgttgccgatgtaggagattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcg                                                                                                                                                                                                                                    <  2:1126038‑M1/1‑1 (MQ=255)                                                       tcgatgcacggcaccggccatgcaacttcgtcaaacacctgttgccgatgtaggagattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcggg                                                                                                                                                                                                                                  >  2:599693‑M1/180‑182 (MQ=255)                                                                   accggccatgcaacttcgtcaaacacctgttgccgatgtaggagattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcGGGCTGc                                                                                                                                                                                                                              >  2:985162‑M1/168‑174 (MQ=255)                                                                   accggccatgcaacttcgtcaaacacctgttgccgatgtaggagattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcGGGCTGc                                                                                                                                                                                                                              <  1:985165‑M1/7‑1 (MQ=255)                                                                                                                      ggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagaggatttctccccagcattggatactgcccgtcagtttgggcgg                                                                                                                                                                                                                                   >  1:1134057‑M1/117‑118 (MQ=255)                                                                                                                      ggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagaggatttctccccagcattggatactgcccgtcagtttgggcgg                                                                                                                                                                                                                                   <  2:1134054‑M1/2‑1 (MQ=255)                                                                                                                                                                              tacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGAGGGCGGTTTTa                                                                                                                    <  1:381966‑M1/113‑1 (MQ=255)                                                                                                                                                                                cgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTggg                                                                                                                                                                                    >  2:1282073‑M1/59‑107 (MQ=255)                                                                                                                                                                                 ggCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGcgccg                                                   >  1:989929/1‑235 (MQ=255)                                                                                                                                                                                    tcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttggtcgg                                                                                                                                                                                                                                   <  2:827101‑M1/2‑1 (MQ=255)                                                                                                                                                                                                     ttctccccggcatttgatactgcccgtcagtttgggcGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCTTAcc                                                                                                                                                      >  2:1169124‑M1/38‑116 (MQ=255)                                                                                                                                                                                                                 gTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGCGCCGCTCAGCGTATCTg                                      >  1:1231821/1‑216 (MQ=255)                                                                                                                                                                                                                 gTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGCGCCGCTCAGCGTATCTGGTGCTTGTGcaacaat                      >  1:218540/1‑231 (MQ=255)                                                                                                                                                                                                                 gTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGCGCCGCTCAGCGTATCTGGTGCTTGTGCAACAACCGa                   >  1:389476/1‑235 (MQ=255)                                                                                                                                                                                                                  ttccAAGCCGGCCAGCTGAGGCTCGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTtgt                                                                        <  2:502144/179‑1 (MQ=18)                                                                                                                                                                                                                  tGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGCGCCGCTCAGCGTATCTGGTGCTTGTGCAACAACCGATa                 >  1:1069892/1‑236 (MQ=255)                                                                                                                                                                                                                    ccAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAggg                                                                              <  1:75443/173‑1 (MQ=11)                                                                                                                                                                                                                    ccAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAggg                                                                              >  2:75443/1‑173 (MQ=11)                                                                                                                                                                                                                     cAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGCGCCGCTCAGCGTATCTGGTGCTTGTGCAACAACCGATAGaa              <  1:1246225/236‑1 (MQ=255)                                                                                                                                                                                                                     cAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGCGCCGCTCAGCGTATCTGGTGCTTGTGCAACAACCGATAGaa              <  1:1096629/236‑1 (MQ=255)                                                                                                                                                                                                                       aGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGCATCTCCTACAGGGGCTTGTGGTTTccc                                                                >  2:593417/1‑184 (MQ=39)                                                                                                                                                                                                                               aGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGCGCCGCTCAGCGTATCTGGTGCTTGTGCAACAACCGATAGAACGTCGGcc      >  2:519511/1‑234 (MQ=255)                                                                                                                                                                                                                               aGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGCGCCGCTCAGCGTATCTGGTGCTTGTGCAACAACCGATAGAACGTCGGcc      >  2:739275/1‑234 (MQ=255)                                                                                                                                                                                                                                 cTGAGGCTGGGGCTGCAACGCAGCCCGACCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGCGCCGCTCAGCGTATCTGGTGCtt                                <  1:337143/206‑1 (MQ=255)                                                                                                                                                                                                                                 agtttgggcGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGCGCCGCTCAGCGTATCTGGTGCTTGTGCAACAACCGATAGAACGTCGGCCGTGa  <  1:464203‑M1/227‑1 (MQ=255)                                                                                                                                                                                                                                      gggcGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCg                                                                                                                          <  2:67750‑M1/107‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                   CGCGGAGACTCGGAGGTCCGTAGACTCCTGTACAACGCCTCGATGAGCGGCAGTCGAACCGCGACCTGGAAGCAGTATTACGCCCATCACCAAGCCCGGGGGAAGAAAACCACTCAAGCCTTGGTGATCCTTGCACGTCGCTTGGCTCGGCTGGCCTTCGGCCTGATGAGGCATCAGGCCGACTGGAAGCCCGAGATATATACCGGAGGTGCCAAGCCGGCCAGCTGAGGCTGGGGCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGGGGCTTGTGGTTTCCCTTTGAGAGCGCCGCTCAGCGTATCTGGTGCTTGTGCAACAACCGATAGAACGTCGGCCGTGA  >  AE015451/3972735‑3973194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.