New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4865140	47 (0.680)	4 (0.060)	4/320	NT	8.5%	coding (733/3489 nt)	smc	Chromosome partition protein Smc
	?	AE015451	= 4865159	42 (0.650)					coding (714/3489 nt)	smc	Chromosome partition protein Smc

AACTGCCGCAGGCGCTGCTGGCCGTGCTGAATGCTCTGCTCGACCCGGGCGATGTCACCGGCCACCGAGTAGAAACGGCCCTGCACCTGGTTGAAGCGTTCGGACAGTTCGTGATGACCGTCGCGCAGGCGTTCGATACTGGCATCGGCATTGCGCTGCTCGGCCACCAGTGCCTCGTGAGAAACGCCCTGATCGCCGATCACCGATTCGCGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4864923‑4865140 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggcgAGACCTGGACGAACAAGTACGCCAGCGCGAATCGGTGATCGGCGATCAGGGCGTTTCTCACGAGGCACTGGTGGCCGAGCAGCGCAATGCCGATGCCAGTATCGAACGCCTGCGCGACGGTCATCACGAACTGTCCGAACGCTTCAACCAGGTGCAGGGCCGTTTCTACTCGGTGGCCGGTGACATCGCCCGGGTCGAGCAGAGCATTCAGCACGGCCAGCAGCGCCTG  <  AE015451/4865159‑4864931                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AACTGCCGCAGGCGCTGCTGGCCGTGCTGAATGCTCTGCTCGACCCGGGCGATGTCACCGGCCACCGAGTAGAAACGGCCCTGCACCTGGTTGAAGCGTTCGGACAGTTCGTGATGACCGTCGCGCAGGCGTTCGATACTGGCATCGGCATTGCGCTGCTCGGCCACCAGTGCCTCGTGAGAAACGCCCTGATCGCCGATCACCGATTCG                                                                                                                                                                                                                                               <  1:277767/210‑1                                                                                                                                                 TCGGCATTGCGCTGCTCGGCCACCAGTGCCTCGTGAGAAACGCCCTGATCGCCGATCACCGATTCGCGCTGGCGAGACCTGGACGAACAAGGACGCCAGCGCGAATCGGTGATCGGCGATCAGGGCGTTTCTCACGAGGCACTGGGGGCCGAGCAGCGCAATGCGGATG                                                                                                                                        >  1:178035/1‑169                                                                                                                                                                                   GAGAAACGCCCTGATCGCCGATCACCGATTCGCGCTGGCGAGACCTGGACGAACAAGTACGCCA                                                                                                                                                                                                               <  1:748018/64‑1                                                                                                                                                                                   GAGAAACGCCCTGATCGCCGATCACCGATTCGCGCTGGCGAGACCTGGACGAACAAGTACGCCA                                                                                                                                                                                                               >  2:748015/1‑64                                                                                                                                                                                     GAAACGCCCTGATCGCCGATCACCGATTCGCGCTGGCGAGACCTGGACGAACAAGTACGCCAGCGCGAATCGGTGATCGGCGATCAGGGCGTTTCTCACGAGGCACTGGTGGCCGAGCAGCGCAATGCCG                                                                                                                                           >  2:661353/1‑130                                                                                                                                                                                                                    GCTGGCGAGACCTGGACGAACAAGTACGCCAGCGCGAATCGGTGATCGGCGATCAGGGCGTTTCTCACGAGGCACTGGTGGCCGAGCAGCGCAATGCCGATGCCAGTATCGAACGCCTGCGCGACGGTCATCACGAACTGTCCGAACGCTTCAACCAGGTGCAGGGCCGTTTCTACTCGGTGGCCGGTGACATCGCCCGGGTCGAGCAGAGCATTCAGCACGGCCAGCAGCGCCTG  <  1:191181/236‑1                                                                                                                                                                                                                    GCTGGCGAGACCTGGACGAACAAGTACGCCAGCGCGAATCGGTGATCGGCGATCAGGGCGTTTCTCACGAGGCACTGGTGGCCGAGCAGCGCAATGCCGATGCCAGTATCGAACGCCTGCGCGACGGTCATCACGAACTGTCCGAACGCTTCAACCAGGTGCAGGGCCGTTTCTACTCGGTGGCCGGTGACATCGCCCGGGTCGAGCAGAGCATTCAGCACGGCCAGCAGCGCCTG  >  1:405524/1‑236                                                                                                                                                                                                                      gtGCGAGACCTGGACGAACAAGTACGCCAGCGCGAATCGGTGATCGGCGATCAGGGCGTTTCTCACGAGGCACTGGTGGCCGAGCAGCGCAATGCCGATGCCAGTATCGAACGCCTGCGCGACGGTCATCACGAACTGTCCGAACGCTTCAACCAGGTGCA                                                                           <  2:244200/159‑1                                                                                                                                                                                                                      TGGCGAGACCTGGACGAACAAGTACGCCAGCGCGAATCGGTGATCGGCGATCAGGGCGTTTCTCACGAGGCACTGGTGGCCGAGCAGCGCAATGCCGATGCCAGTATCGAACGCCTGCGCGACGGTCATCACGAACTGTCCGAACGCTTCAACCAGGTGCAGGGCCGTTTCTACTCGGTGGCCGGTGACATCGCCCGGGTCGAGCAGAGCATTCAGCAC                 >  1:440957/1‑219                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AACTGCCGCAGGCGCTGCTGGCCGTGCTGAATGCTCTGCTCGACCCGGGCGATGTCACCGGCCACCGAGTAGAAACGGCCCTGCACCTGGTTGAAGCGTTCGGACAGTTCGTGATGACCGTCGCGCAGGCGTTCGATACTGGCATCGGCATTGCGCTGCTCGGCCACCAGTGCCTCGTGAGAAACGCCCTGATCGCCGATCACCGATTCGCGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4864923‑4865140 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggcgAGACCTGGACGAACAAGTACGCCAGCGCGAATCGGTGATCGGCGATCAGGGCGTTTCTCACGAGGCACTGGTGGCCGAGCAGCGCAATGCCGATGCCAGTATCGAACGCCTGCGCGACGGTCATCACGAACTGTCCGAACGCTTCAACCAGGTGCAGGGCCGTTTCTACTCGGTGGCCGGTGACATCGCCCGGGTCGAGCAGAGCATTCAGCACGGCCAGCAGCGCCTG  <  AE015451/4865159‑4864931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.