New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5441018 =	68 (0.990)	3 (0.050)	3/322	NT	4.3%	coding (1566/1653 nt)	PP_4780	putative Acyl‑CoA dehydrogenase
	?	AE015451	5441085 =	69 (1.060)					coding (1499/1653 nt)	PP_4780	putative Acyl‑CoA dehydrogenase
Rejected: Frequency below/above cutoff threshold.

CAACCTCAAGGGGGCGTTTGCCGACACCGGTGACATGCAGTACCGCGCGCGGCAACTGACCGAGGATATTGCCCTGGCGTTGCAGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5441168‑5441018 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttggccTGCAACGCCAGGGCAATATCCTCGGTCAGTTGCCGCGCGCGGTACTGCATGTCACCGGTGTCGGCAAACGCCCCCTTGAGGTTGCCGATATGCGCCGCCAGGCGCGGGTCGCCATGCCCGTCACCCAGTTCGACAAACAGTGCATCGAGTACGCCCGGCTCCTTGGACAAGGCCCGCAGCACATCCAGGCACTGCACGTTGCCCGAGCCCT  >  AE015451/5441085‑5441295                                                                                                                                                                                                                                                                                                                                                                            ccACCTCAAGGGGGCGTGTGCCGACACCGGTGACATGCAGTACCGCGCGCGGCAACTGACCGAGGATATTGCCCTGGCGTTGCAGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGCCGTCAGTGATGCGTTTATCGGCAGCCGCTT                                                                                                                                                                                                                         <  2:154629/145‑1                                         TACCGCGCGCGGCAACTGACCGAGGATATTGCCCTGGCGTTGCAGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTCTCGGCAGCCGCTTGGCCTGCAACGCCAGGGCAATATCCTCGGTCAGTT                                                                                                                                                                                      <  1:247758/142‑1                                                CGCGGCAGCTGACCGAGGATATGGCCGTGGCGTTGCAGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCTGCAACGCCAGGGCAATATCCTCGGTCAGTTGCCGCGCG                                                                                                                                                                              <  2:675795/143‑1                                                                    ATTGCCCTGGCGTTGCAGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCCTGCAACGCCAGGGCAATATCCTCGGTCAGTTGCCGCGCGCGGTACTGCATGTCACCGGTGTCGGCAA                                                                                                                                                  <  2:1191574/151‑1                                                                                                                                                 CTTGGCCTGCAACGCCAGGGCAATATCCTCGGTCAGTTGCCGCGCGCGGTACTGCATGTCACCGGTGTCGGCAAACGCCCCCTTGAGGTTGCCGATATGCGCCGCCAGGCGCGGGTCGCCATGCCCGTCACCCAGTTCGACA                                                                              >  2:942257/1‑142                                                                                                                                                  TTGGCCTGCAACGCCAGGGCAATATCCTCGGTCAGTTGCCGCGCGCGGTACTGCATGTCACCGGTGTCGGCAAACGCCCCCTTGAGGTTGCCGATATGCGCCGCCAGGCGCGGGTCGCCATGCCCGTCACCCAGTTCGACAAACAGTGCATCGAGTACGCCCGGCTCCTTGGACAAGGCCCGCAGCACATCCAGGCACTGCACGTTGCCCGAGCCCT  <  1:788009/217‑1                                                                                                                                                                                                                                                                                                                                                                            CAACCTCAAGGGGGCGTTTGCCGACACCGGTGACATGCAGTACCGCGCGCGGCAACTGACCGAGGATATTGCCCTGGCGTTGCAGGCCAAGCTGCTGCTGGAGGCCGGGAATGCAGACGTCAGTGATGCGTTTATCGGCAGCCGCTTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5441168‑5441018 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttggccTGCAACGCCAGGGCAATATCCTCGGTCAGTTGCCGCGCGCGGTACTGCATGTCACCGGTGTCGGCAAACGCCCCCTTGAGGTTGCCGATATGCGCCGCCAGGCGCGGGTCGCCATGCCCGTCACCCAGTTCGACAAACAGTGCATCGAGTACGCCCGGCTCCTTGGACAAGGCCCGCAGCACATCCAGGCACTGCACGTTGCCCGAGCCCT  >  AE015451/5441085‑5441295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.