New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 5910238 = | 77 (1.120) | 5 (0.080) | 4/320 | NT | 6.5% | coding (513/1362 nt) | spuC‑II | polyamine:pyruvate transaminase |
? | AE015451 | 5910270 = | 72 (1.110) | coding (481/1362 nt) | spuC‑II | polyamine:pyruvate transaminase |
CTCACCCGCCTGCGCTCGAGCTGGCCAAGGCGATCACCGACGTGGCGCCGAAAGGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5910473‑5910238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatgcacCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGCGCCCAGTAGTGACGCACCATGCGCAGCACAGTGTCGTTGCCTTCGGAGCCGGAGCCGGTGAAGAACACATGGGTCATACCTTTCGGCGCCACGTCGGTGATCGCCTTGGCCAGCTCGAGCGCAGGCGGGTGAGCGGTCTGGAAGAACAGGTTGTAGTACG > AE015451/5910270‑5910500 CTCACCCGCCTGCGCTCGAGCTGGCCAAGGCGATCACCGACGTGGCGCCGAAAGGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCAC > 1:410070/1‑236 ACCCGCCTGCGCTCGAGCTGGCCAAGGCGATCACCGACGTGGCGCCGAAAGGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCA > 1:1068222/1‑232 GCGATCACCGACGTGGCGCCGACAGGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAGCCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCA < 2:279131/206‑1 GGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCACCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTT > 1:1273465/1‑235 GTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCACCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATG < 2:1273462/213‑1 GTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCACCGGCGAAGGTGGAGCCGTGGTAACCGTTG < 2:859209/149‑1 ACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCACCGGCGAAGGTGGAGCCGTGGTAACCGTTG < 1:17489/142‑1 ACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCACCGGCGAAGGTGGAGCCGTGGTAACCGTTG > 2:17489/1‑142 GCACCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGCGCCCAGTAGTGACGCACCATGCGCAGCACAGTGTCGTTGCCTTCGGAGCCGGAGCCGGTGAAGAACACATGGGTCATACCTTTCGGCGCCACGTCGGTGATCGCCTTGGCCAGCTCGAGCGCAGGCGGGTGAGCGGTCTGGAAGAACAGGTTGTAGTACG < 1:817930/235‑1 ACCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGCGCCCAGTAGTGACGCACCATGCGCAGCACAGTGTCGTTGCCTTCGGAGCCGGAGCCGGTGAAGAACACATGGGTCATACCTTTCGGCGCCACGTCGGTGATCGCCTTGGCCAGCTCGAGCGCAGGCGGGT < 1:1239921/203‑1 ACCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGC < 1:396980/73‑1 ACCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGC > 2:396977/1‑73 CTCACCCGCCTGCGCTCGAGCTGGCCAAGGCGATCACCGACGTGGCGCCGAAAGGTATGACCCATGTGTTCTTCACCGGCTCCGGCTCCGAAGGCAACGACACTGTGCTGCGCATGGTGCGTCACTACTGGGCGCTGAAGGGCAAACCGCACAAGCAGACCATCATCGGCCGCATCAACGGTTACCACGGCTCCACCTTCGCCGGTGCATGCCTGGGCGGTATGAGCGGCATGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5910473‑5910238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatgcacCGGCGAAGGTGGAGCCGTGGTAACCGTTGATGCGGCCGATGATGGTCTGCTTGTGCGGTTTGCCCTTCAGCGCCCAGTAGTGACGCACCATGCGCAGCACAGTGTCGTTGCCTTCGGAGCCGGAGCCGGTGAAGAACACATGGGTCATACCTTTCGGCGCCACGTCGGTGATCGCCTTGGCCAGCTCGAGCGCAGGCGGGTGAGCGGTCTGGAAGAACAGGTTGTAGTACG > AE015451/5910270‑5910500 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |