New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5441955 =	61 (0.890)	3 (0.050)	3/322	NT	5.3%	coding (629/1653 nt)	PP_4780	putative Acyl‑CoA dehydrogenase
	?	AE015451	5441989 =	49 (0.750)					coding (595/1653 nt)	PP_4780	putative Acyl‑CoA dehydrogenase

GCCGATCATCCACGCCAGCGCACCGCGGAACTCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTATTCAGCCAGCTCAGGCTGCAGGCGCAATGCCGGCACGGCGGCAAACGTCATGGTCAGCGGGCAGCCGGTGCC  >  AE015451/5441723‑5442190                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                            atgacctacctgcacagccaggccgaggccggcaccggctgcccgctgaccatgacgtttgccgccgtgccggcattgcgcctgcagcctgagctggctgaatactggctgccgaaaatccttgcctgcgaatatgacccgcgcaacgttggcgaccggcacaaggccggggtcaccctgggcatggccatgaccgaaaaacagggcggcaccgatgtgcgcgccaacactaCCCg                                                                                                                                                                                                                                          <  1:614791‑M1/4‑1 (MQ=255)        atcCACGCCAGCGCACCGCGGAACTCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCgg                                                                                                                                                                                                                                   >  1:434266/1‑236 (MQ=255)              gCCAGCGCACCGCGGAACTCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCac                                                                                                                                                                                                                              <  1:849694/235‑1 (MQ=255)                      cgcaatgccggcaccggctgcccgctgaccatgacgtttgccgccgtgccggcattgcgcctgcagcctgagctggctgaatactggctgccgaaaatccttgcctgcgaatatgacccgcgcaacgttggcgaccggcacaaggccggggtcaccctgggcatggccatgaccgaaaaacagggcggcaccgatgtgcgcgccaacactaCCCg                                                                                                                                                                                                                                          <  2:470660‑M1/4‑1 (MQ=255)                         gcgGAACTCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATa                                                                                                                                                                                                                    <  2:956170/234‑1 (MQ=255)                            gcaCTCCACCTCGCTGGAGGCGTGGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGccc                                                                                                                                                                                                               <  1:195990/234‑1 (MQ=255)                                tCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCggg                                                                                                                                                                                                            <  1:131581/235‑1 (MQ=255)                                       cGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGTGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATa                                                                                                                                                                                                                    <  1:317341/220‑1 (MQ=255)                                       cGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGgc                                                                                                                                                                                                                                  <  2:877537/206‑1 (MQ=255)                                                            tGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTgccgcc                                                                                                                                                                                >  1:1015244/1‑235 (MQ=255)                                                                   cTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGgcgcgc                                                                                                                                                                                              >  1:992160/1‑214 (MQ=255)                                                                    ttGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCgg                                                                                                                                                                                                                                   <  1:296254/176‑1 (MQ=255)                                                                     tGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGt                                                                                                                                                                                                           >  2:1069502/1‑199 (MQ=255)                                                                           tcAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCAt                                                                                                                                                                 <  1:755205/235‑1 (MQ=255)                                                                               gcgcTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTc                                                                                                                                                                   >  1:1242611/1‑229 (MQ=255)                                                                                cgcTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCAt                                                                                                                                                           >  1:817459/1‑236 (MQ=255)                                                                                 gcTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCa                                                                                                                                                            <  2:559634/234‑1 (MQ=255)                                                                                    ggATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGTACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGGAGTGTTGGCGCGCACATCGGt                                                                                                                                                                                      >  1:69967/1‑205 (MQ=255)                                                                                      atatAGAACTGGTTGCGGTTGGCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAg                                                                                                                                                     <  1:1132288/236‑1 (MQ=255)                                                                                       tataGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTgccgc                                                                                                                                                                                 <  1:291586/207‑1 (MQ=255)                                                                                       tataGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAgg                                                                                                                                                    >  1:789257/1‑236 (MQ=255)                                                                                            aaCTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGa                                                                                                                                                <  1:23078/235‑1 (MQ=255)                                                                                              ttggctgaatactggctgccgaaaatccttgcctgcgaatatgacccgcgcaacgttggcgaccggcacaaggccggggtcaccctgggcatggccatgaccgaaaaacagggcggcaccgatgtgcgcgccaacactaccc                                                                                                                                                                                                                                           >  2:1071373‑M1/140‑142 (MQ=255)                                                                                               tGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGca                                                                                                                                                                                             <  1:1278581/187‑1 (MQ=255)                                                                                               tGGGTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCggggcagg                                                                                                                                                                                                       <  1:456533/177‑6 (MQ=255)                                                                                                  ttGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGca                                                                                                                                                                                             >  1:78944/1‑184 (MQ=255)                                                                                                  ttGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCa                                                                                                                                                                  >  1:1059017/1‑211 (MQ=255)                                                                                                  ttGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCCTGGCCATGCCCAGGGTGACCCCGGc                                                                                                                                         >  1:749254/1‑236 (MQ=255)                                                                                                  ttGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGGTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCGCATAGGCACGCCCCGGGCCCGgc                                                                                                                                                                                                                                  >  2:22460/1‑147 (MQ=255)                                                                                                    gCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGAtc                                                                                                                                                                                                                    >  2:560467/1‑158 (MQ=255)                                                                                                    gCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGcc                                                                                                                                        >  1:470663/1‑235 (MQ=255)                                                                                                    gCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCt                                                                                                                                       >  1:1110417/1‑236 (MQ=255)                                                                                                    gCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGCCCAACCAGCTCATAGCCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCg                                                                                                                                                                                                              >  2:37184/1‑165 (MQ=255)                                                                                                    gCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGGCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCgg                                                                                                                                                                                                                                   >  2:291585/1‑144 (MQ=255)                                                                                                                       tGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGtt                                                                                                                    <  1:578694/236‑1 (MQ=255)                                                                                                                       tGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGtt                                                                                                                    <  1:711134/236‑1 (MQ=255)                                                                                                                         gcgcGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGtt                                                                                                                                                                           <  2:756016/179‑1 (MQ=255)                                                                                                                                      acgcagcTCAGGCCTGTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGa                                                                                                                                                <  2:985822/191‑1 (MQ=255)                                                                                                                                                         cGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTg                                                                                                                                                                             >  2:799479/1‑145 (MQ=255)                                                                                                                                                         cGGTTTGCGCCAAGATCAGGAAAGCGACGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGACTGCCCCGGGCCCGACGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGACGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCat                                                                                                         >  2:644967/1‑213 (MQ=255)                                                                                                                                                          ggTTTGCGCCAAGGTCAGGAAAGCGCCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCaccgacc                                                                                                                                                                                                                         <  2:246088/100‑1 (MQ=255)                                                                                                                                                            tttGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGAc                                                                                                                                               <  1:22460/172‑1 (MQ=255)                                                                                                                                                                cgcCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAg                                                                            <  1:942342/235‑1 (MQ=255)                                                                                                                                                                cgcCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAg                                                                            <  1:493029/235‑1 (MQ=255)                                                                                                                                                                        tCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTAttga                                                                      >  2:758537/1‑231 (MQ=255)                                                                                                                                                                             tcaccctgggcatggccatgaccgaaaaacagggcggcaccggtgcgcgcgccaacactaCCCgg                                                                                                                                                                                                                                         <  2:22143‑M1/5‑1 (MQ=255)                                                                                                                                                                             tcaccctgggcatggccatgaccgaaaaacagggcggcaccgatgtgcgcgccaacactaCCCGGGCCCGGCGCACCGACCGGATa                                                                                                                                                                                                                    <  1:777695‑M1/26‑1 (MQ=255)                                                                                                                                                                             tcaccctgggcatggccatgaccgaaaaacagggcggcaccgatgtgcgcgccaacactaCCCGGGCCCGGCGCACCGACCGGATa                                                                                                                                                                                                                    >  2:777692‑M1/61‑86 (MQ=255)                                                                                                                                                                             aaaGCGTCGCACGTCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGa                                                                                                                                                <  2:291850/154‑1 (MQ=255)                                                                                                                                                                                    cGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCatat                                                                                                       >  2:769242/1‑188 (MQ=255)                                                                                                                                                                                     gCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGccc                                                                                                                                                                                                               >  1:335407/1‑83 (MQ=255)                                                                                                                                                                                     gCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGccc                                                                                                                                                                                                               <  2:335406/83‑1 (MQ=255)                                                                                                                                                                                         aTCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGGGTTGGCGCGCACATCGGTGCCGCCCTGGTTTTc                                                                                                                                                                       >  2:307078/1‑119 (MQ=255)                                                                                                                                                                                           cGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTc                                                                                     <  1:1029978/199‑1 (MQ=255)                                                                                                                                                                                            ggCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTc                                                                                                                             <  2:692097/158‑1 (MQ=255)                                                                                                                                                                                            ggCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTAtt                                                                        <  2:789254/211‑1 (MQ=255)                                                                                                                                                                                             gcgcCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCa                                                                                 <  2:527172/201‑1 (MQ=255)                                                                                                                                                                                             catgaccgaaaaacagggcggcaccgatgtgcgcgccaacactaCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCGAGGGTGACCCCGGCCtt                                                                                                                                      <  2:926791‑M1/104‑1 (MQ=255)                                                                                                                                                                                                 cGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTATTCAGCCAGCTCAGGCTGCAGGCGCAATGCCg                                          >  1:733567/1‑236 (MQ=255)                                                                                                                                                                                                   aGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGTGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGgcg                                                                                                                                                                                                 >  1:121053/1‑83 (MQ=255)                                                                                                                                                                                                      aGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGc                                                                                  >  2:857804/1‑191 (MQ=255)                                                                                                                                                                                                      aGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGc                                                                                  <  1:857807/191‑1 (MQ=255)                                                                                                                                                                                                        aaCCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTATTCAGCCAGCTCAGGCTGCAg                                                     <  1:1025473/218‑1 (MQ=255)                                                                                                                                                                                                                gtgGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTTCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTATTCAGCCAGCTCAGGCTGCAGGCGCCATGCCGGCAcgg                                    >  1:38886/1‑227 (MQ=255)                                                                                                                                                                                                                     cAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGa                                                                                                                                                <  1:150754/114‑1 (MQ=255)                                                                                                                                                                                                                     cAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGa                                                                                                                                                >  2:150754/1‑114 (MQ=255)                                                                                                                                                                                                                     cAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCCACGTTGCGCGGGTCatat                                                                                                       >  1:138458/1‑155 (MQ=255)                                                                                                                                                                                                                              cctcttccTGCCCCTGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTAATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTATTCAGCCAGCGCAGGCTGCAGgc                                                   >  1:78215/7‑198 (MQ=255)                                                                                                                                                                                                                                   gCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTATTCAGCCAGCTCAGGCTGCAGGCGCAATGCCGGCACGGCGGCAAACGTCATGGTCAGCGGGc            <  2:1110414/232‑1 (MQ=255)                                                                                                                                                                                                                                         CCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTAt                                                                         <  1:1123075‑M1/165‑1 (MQ=255)                                                                                                                                                                                                                                         CCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTATTcagccagc                                                                <  1:980366‑M1/174‑1 (MQ=255)                                                                                                                                                                                                                                         CCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTATTcagccagc                                                                >  2:980363‑M1/1‑174 (MQ=255)                                                                                                                                                                                                                                         CCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTATTCAGCCAGCTCAGGCTGCAGGCGCAATGCCGGCACGGCGGCAAACg                           <  1:361138‑M1/211‑1 (MQ=255)                                                                                                                                                                                                                                         CCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTATTCAGCCAGCTCAGGCTGCAGGCGCAATGCCGGCACGGCGGCAAACGTCATGGTCAGCGGGCAGCCGGTGcc  >  1:322177‑M1/1‑236 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                            GCCGATCATCCACGCCAGCGCACCGCGGAACTCCACCTCGCTGGAGGCGTTGGAGCTGTTGCCCAGCTTGTTCTTCAGGCGCTGGATATAGAACTGGTTGCGGTTGTCATCGGGGCGGTGGCGCGGCAGCAGGAAGCAGCTCAGGCCTTTTTCGGTTTGCGCCAAGGTCAGGAAAGCGTCGCACATCGGCGCCGAGCAGAACCACTTGTGGCCAACCAGCTCATAGGCCTGCCCCGGGCCCGGCGCACCGACCGGATAGGCCCGGGTAGTGTTGGCGCGCACATCGGTGCCGCCCTGTTTTTCGGTCATGGCCATGCCCAGGGTGACCCCGGCCTTGTGCCGGTCGCCAACGTTGCGCGGGTCATATTCGCAGGCAAGGATTTTCGGCAGCCAGTATTCAGCCAGCTCAGGCTGCAGGCGCAATGCCGGCACGGCGGCAAACGTCATGGTCAGCGGGCAGCCGGTGCC  >  AE015451/5441723‑5442190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.