| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 229741 | 29 (0.660) | 3 (0.070) | 3/328 | NT | 9.6% | coding (274/876 nt) | PP_0178 | putative efflux pump |
| ? | AE015451 | = 229745 | 29 (0.690) | coding (278/876 nt) | PP_0178 | putative efflux pump | |||||
CTGACCTTGCTGGTAGTGACCTTCGCCGCCGTGCTCGTGTGGCAGATGGTGGTCTACTACATGTTTGCCCCCTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/229504‑229741‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaaggGTTGCCTTGGCTTGACGCAGGGCCAGGGTGAAGCGGTCCTGGTCGATGGTGAACAGCACGTCGCCACGTTTGACGGTCTGGTTGTCGCGCACCTCGACCTTCTGGATCAATCCCGACACATCGGGGGCGATCTGGATCACGTCAGCGCGGATATGGCCGTCTCGGGTCCAGGGGGCAAACATGTAGTAGACCACCATCTGCCACACGAGCACGGCGGCGAAGGTCACTACC < AE015451/229745‑229515 CTGACCTTGCTGGTAGTGCCCTTCGCCGCCGTGCTCGTGTGGCAGATGGTGGTCTACTACATGTTTGCCCCCTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAA < 1:161127/236‑1CTGACCTTGCTGGTAGTGACCTTCGCCGCCGTGCTCGTGTGGCAGATGGTGGTCTACTACATGTTTGCCCCCTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAA < 1:342686/236‑1 GGTGGTCTACTACATGTTTGCCCCCTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAA < 1:237097/189‑1 CGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCA > 1:506058/1‑122 CGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCA < 2:506056/122‑1 CGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGGTTGCCTTGGCTTGACGCAGGGCCAGGGTGAAGCGGTCCTGGTCGATGGTGAACAGCACGTCGCCACGTTTGACGGTCTGGTTGTCGCGCACC > 1:474999/1‑152 CGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGGTTGCCTTGGCTTGACGCAGGGCCAGGGTGAAGCGGTCCTGGTCGATGGTGAACAGCACGTCGCCACGTTTGACGGTCTGGTTGTCGCGCACC < 2:474997/152‑1 TGTTCACCATCGACCAGGACCGCTTCACCCTGGC‑‑‑GC‑TC‑‑GCCAAGGGTTGCCTTGGCTTGACGCAGGGCCAGGGTGAAGCGGTCCTGGTCGATGGTGAACAGCACGTCGC > 2:560313/1‑109 GCCAAGGGTTGCCTTGGCTTGACGCAGGGCCAGGGTGAAGCGGTCCTGGTCGATGGTGAACAGCACGTCGCCACGTTTGACGGTCTGGTTGTCGCGCACCTCGACCTTCTGGATCAATCCCGACACATCGGGGGCGATCTGGATCACGTCAGCGCGGATATGG > 2:22979/1‑163 CCAAGGGTTGCCTTGGCTTGACGCAGGGCCAGGGTGAAGCGGTCCTGGTCGATGGTGAACAGCACGTCGCCACGTTTGACGGTCTGGTTGTCGCGCACCTCGACCTTCTGGATCAATCCCGACACATCGGGGGCGATCTGGATCACGTC < 1:342988/149‑1 CAAGGGTTGCCTTGGCTTGACGCAGGGCCAGGGTGAAGCGGTCCTGGTCGATGGTGAACAGCACGTCGCCACGTTTGACGGTCTGGTTGTCGCGCACCTCGACCTTCTGGATCAATCCCGACACATCGGGGGCGATCTGGATCACGTCAGCGCGGATATGGCCGTCTCGGGTCCAGGGGGCAAACATGTAGTAGACCACCATCTGCCACACGAGCACGGCGGCGAAGGTCACTACC < 1:22979/236‑1 CAAGGGTTGCCTTGGCTTGACGCAGGGCCAGGGTGAAGCGGTCCTGGTCGATGGTGAACAGCACGTCGCCACGTTTGACGGTCTGGTTGTCGCGCACCTCGACCTTCTGGATCAATCCCGACACATCGGGGGCGATCTGGATCACGTCAGCGCGGATATGGCCGTCTCGGGTCCAGGGGGCAAACATGTAGTAGACCACCATCTGCCACACGAGCACGGCGGCGAAGGTCACTACC < 1:232103/236‑1 CTGACCTTGCTGGTAGTGACCTTCGCCGCCGTGCTCGTGTGGCAGATGGTGGTCTACTACATGTTTGCCCCCTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/229504‑229741‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaaggGTTGCCTTGGCTTGACGCAGGGCCAGGGTGAAGCGGTCCTGGTCGATGGTGAACAGCACGTCGCCACGTTTGACGGTCTGGTTGTCGCGCACCTCGACCTTCTGGATCAATCCCGACACATCGGGGGCGATCTGGATCACGTCAGCGCGGATATGGCCGTCTCGGGTCCAGGGGGCAAACATGTAGTAGACCACCATCTGCCACACGAGCACGGCGGCGAAGGTCACTACC < AE015451/229745‑229515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |