New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 229741 | 29 (0.660) | 3 (0.070) | 3/328 | NT | 9.6% | coding (274/876 nt) | PP_0178 | putative efflux pump |
? | AE015451 | = 229745 | 29 (0.690) | coding (278/876 nt) | PP_0178 | putative efflux pump |
GGTAGTGACCTTCGCCGCCGTGCTCGTGTGGCAGATGGTGGTCTACTACATGTTTGCCCCCTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGCTGTCGATACTGCCCAGCTCAACCTTGACCGCTCGGTGGTGCGCAGCCCGGTAGACGGCTACCTCAACGACC > AE015451/229515‑229966 | ggTAGTGACCTTCGCCGCCGTGCTCGTGTGGCAGATGGTGGTCTACTACATGTTTGCCCCCTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACccttg < 1:22979‑M2/236‑6 (MQ=255) ggTAGTGACCTTCGCCGCCGTGCTCGTGTGGCAGATGGTGGTCTACTACATGTTTGCCCCCTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACccttg < 1:232103‑M2/236‑6 (MQ=255) tgtgGCAGATGGTGGTCTACTACATGTTTGCCCCCTGGACCCGAGCCGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGgag < 2:134985/224‑1 (MQ=255) gATGGTGGTCTACTACATGTTTGCCCCCTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTcc > 1:124447/1‑235 (MQ=255) ggtCTACTACATGTTTGCCCCCTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGaa > 1:753317/1‑235 (MQ=255) cATGTTTGCCCCCTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAgcgcagcgca > 1:628113/1‑236 (MQ=255) cccccTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGCAGCGCAGCGCAACCGc > 1:268930/1‑233 (MQ=255) cccTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCt > 2:748260/1‑236 (MQ=255) cccTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCt > 1:804872/1‑236 (MQ=255) ccTGGCCCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTg < 1:365526/236‑1 (MQ=255) ccATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACccttggc > 2:22979‑M2/1‑156 (MQ=255) gACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACccttgg < 1:342988‑M2/149‑7 (MQ=255) cAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGcc < 1:57107/235‑1 (MQ=255) ccGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAg > 1:615235/1‑236 (MQ=255) gggATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGgcccgtgccc < 1:21677/236‑1 (MQ=255) aTCCAGAAGGTCGCGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGgcc < 1:353182/222‑1 (MQ=255) ggTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACccttggcttgacgcagggccagggtgaagcggtcctggtcgatggtgaacagcacgtcg > 1:474999‑M2/1‑93 (MQ=255) ggTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACccttggcttgacgcagggccagggtgaagcggtcctggtcgatggtgaacagcacgtcg < 2:474997‑M2/152‑60 (MQ=255) gTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGgcgc < 1:404809/235‑1 (MQ=255) cAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGc < 2:628111/234‑1 (MQ=255) gCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACccttggcgagcgccagggtgaagcggtcctggtcgatggtgaaca > 2:560313‑M2/1‑64 (MQ=255) cGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGCTGTCGATACTGCCCAg > 1:94603/1‑226 (MQ=255) tGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCATCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGCAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGGCAGCGAGGCGCAAGCGGcggac > 2:223950/1‑205 (MQ=255) gTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGCTGTCGATACt < 2:753315/214‑1 (MQ=255) ccATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCaa < 2:804870/194‑1 (MQ=255) ccAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGCTGTCGATACTGCCCAGCTCAACCTTGACCGCTCGGTGGTGCGCa > 1:574616/1‑236 (MQ=255) cAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGCTGTCGATACTGCCCAGCTCAACCTTGACCGCTCGGTGGTGCGCAg < 1:318484/236‑1 (MQ=255) ctacACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAAGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCACGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGc < 1:255674/180‑1 (MQ=255) cACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGCTGTCg > 1:49165/1‑185 (MQ=255) ccccTGGCCCTGCTTCAAGCCAAGGCAACCCTGGGCGAGCGCCAGGAGACCCTgg < 2:172406/54‑1 (MQ=255) aCCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGCTg > 1:42733/1‑181 (MQ=255) aCCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGCTGTCGATACTGCCCAGCTCAACCTTGACCGCTCGGTGGTGCGCAGCCCGGTAGACg < 1:748262/235‑1 (MQ=255) cccTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGCAGCGCAGCGCAACCGCac > 2:96656/1‑81 (MQ=255) cTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGCTGTCGATACTGCCCAGCTCAACCTTGACCGCTCggtgg > 2:388629/1‑208 (MQ=255) cAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGCTGTCGATACTGCCCAGCTCAACCTTGACCGCTCGGTGGTgcg > 1:682555/1‑206 (MQ=255) cAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGCTGTCGATACTGCCCAGCTCAACCTTGACCGCTCGGTGGTGCGCAGCCCGGTAGACGGCTACCTCAACGAcc < 1:45063/235‑1 (MQ=255) | GGTAGTGACCTTCGCCGCCGTGCTCGTGTGGCAGATGGTGGTCTACTACATGTTTGCCCCCTGGACCCGAGACGGCCATATCCGCGCTGACGTGATCCAGATCGCCCCCGATGTGTCGGGATTGATCCAGAAGGTCGAGGTGCGCGACAACCAGACCGTCAAACGTGGCGACGTGCTGTTCACCATCGACCAGGACCGCTTCACCCTGGCCCTGCGTCAAGCCAAGGCAACCCTTGGCGAGCGCCAGGAGACCCTGGCCCAGGCTTCCCGCGAAGCGCAGCGCAACCGCAAGCTGGGCAACCTGGTGGCCGCCGAGCAACTGGAAGAAAGCCAGTCCCGCGAGGCCCGTGCCCGTTCGGCTGTCAGCGAGGCGCAAGTGGCTGTCGATACTGCCCAGCTCAACCTTGACCGCTCGGTGGTGCGCAGCCCGGTAGACGGCTACCTCAACGACC > AE015451/229515‑229966 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |