New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 424959	34 (0.780)	4 (0.100)	3/324	NT	11.1%	coding (351/1113 nt)	PP_0349	putative Membrane protein
	?	AE015451	= 425012	32 (0.770)					coding (298/1113 nt)	PP_0349	putative Membrane protein

CAGGTCGAGCCAGCGCAGGCGGCGGGATTTCTTGTGGCGTACGGTGCCGAATTCCAGGCGGCGCATGAACGGCGCATAGAGCACGGTGCCGGAGACAATCGCGACAATGAACAATACGCCCATGAAGGCCAGCAGCAGCTTGCCCGGCAGGCCTGCGAACATGTCCACATGCAGGCGCAGCATCACCATCATGAATCCACCATTGGCGGCCGGCATGGCCACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/424734‑424959 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaccgccAGCACCGACCCCAACCTGTCGCACACCTTCATGCTCGATGCACGCACCGGCGAGGCGGTGGCCATGCCGGCCGCCAATGGTGGATTCATGATGGTGATGCTGCGCCTGCATGTGGACATGTTCGCAGGCCTGCCGGGCAAGCTGCTGCTGGCCTTCATGGGCGTATTGTTCATTGTCGCGATTGTCTCCGGCACCGTGCTCTATGCGCCGTTCATGCGCCGCCTGGAATTCGGCA  <  AE015451/425012‑424778                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAGGTCGAGCCAGCGCAGGCGGCGGGATTTCTTGTGGCGTACGGTGCCGAATTCCAGGCGGCGCATGAACGGCGCATAGAGCACGGTGCCGGAGACAATCGCGACAATGAACAATACGCCCATGAAGGCCAGCAGCAGCTTGCCCGGCAGGCCTGCGAACATGTCCACATGCAGGCGCAGCATCACCATCATGAATCCACCATTGGCGGCCGGCATGGCCACCGCCccgc                                                                                                                                                                                                                                         >  2:409012/1‑226                      GCGGGATTTCTTGTGGCGTACGGTGCCGAATTCCAGGCGGCGCATGAACGGCGCATAGAGCACGGTGCCGGAGACAATCGCGACAATGAACAATACGCCCATGAAGGCCAGCAGCAGCTTGCCCGGCAGGCCTGCGAACATGTCCACATGCAGGCGCAGCATCACCATCATGAATCCACCATTGGCGGCCGGCATGGCCACC                                                                                                                                                                                                                                                >  1:587017/1‑202                                               CCGAATTCCAGGCGGCGCATGAACGGCGCATAGAGCACGGTGCCGGAGACAATCGCGACAATGAACAATACGCCCATGAAGGCCAGCAGCAGCTTGCCCGGCAGGCCTGCGAACATGTCCACATGCAGGCGCAGCATCACCATCATGAATCCACCATTGGAGGCCGGCACGGCCACCG                                                                                                                                                                                                                                               >  1:176661/1‑178                                                                                                                                                                                 GCAGCATCACCATCATGAATCCACCATTGGCGGCCGGCATGGCCACCGCCAGCCCCGACCCCCACCTGTCGCACACCTTCATGCTCGATGCACGCACCGGCCAGG                                                                                                                                                                                      >  1:566375/1‑105                                                                                                                                                                                                  AATCCACCATTGGCGGCCGGCATGGCCACCGCCAGCACCGACCCCAACCTGTCGCACACCTTCATGCTCGATGCACGCACCGGCGAGGCGGTGGCCATGCCGGCCGC                                                                                                                                                                   >  2:278586/1‑107                                                                                                                                                                                                       ACCATTGGCGGCCGGCATGGCCACCGCCAGCACCGACCCCAACCTGTCGCACACCTTCATGCcc                                                                                                                                                                                                         >  2:659598/1‑62                                                                                                                                                                                                                  CCGGCATGGCCACCGCCAGCACCGACCCCAACCTGTCGCACACCTTCATGCTCGATGCACGCACCGGCGAGGCGGTGGCCATGCCGGCCGCCAATGGTGGATTCATGATGGTGATGCTGCGCCTGCATGTGGACATGTTCGCAGGCCTGCCGGGCAAGCTGCTGCTGGCCTTCATGGGCGTATTGTTCATTGTCGCGATTGTCTCCGGCACCGTG                                       >  1:409014/1‑215                                                                                                                                                                                                                         ccccgCCGCCAGCACCGACCCCAACCTGTCGCACACCTTCATGCTCGATGCACGCACCGGCGAGGCGGTGGCCATGCCGGCCGCCAATGGTGGATTCATGATGGTGATGCTGCGCCTGCATGTGGACATGTTCGCAGGCCTGCCGGGCAAGCTGCTGCTGGCCTTCATGGGCGTATTGTTCAT                                                                <  1:204642/178‑1                                                                                                                                                                                                                           CCACCGCCAGCACCGACCCCAACCTGTCGCACACCTTCATGCTCGATGCACGCACCGGCGAGGCGGTGGCCATGCCGGCCGCCAATGGTGGATTCATGATGGTGATGCTGCGCCTGCATGTGGACATGTTCGCAGGCCTGCCGGGCAAGCTGCTGCTGGCCTTCATGGGCGTATTGTTCATTGTCGCGATTGTCTCCGGCACCGTGCTCTA                                  >  1:8475/1‑211                                                                                                                                                                                                                                  CAGCACCGACCCCAACCTGTCGCACACCTTCATGCTCGATGCACGCACCGGCGAGGCGGTGGCCATGCCGGCCGCCAATGGTGGATTCATGATGGTGATGCTGCGCCTGCATGTGGACATGTTCGCAGGCCTGCCGGGCAAGCTGCTGCTGGCCTTCATGGGCGTATTGTTCATTGTCGCGATTGTCTCCGGCACCGTGCTCTATGCGCCGTTCATGCGCCGCCTGGAATTCGGCA  >  1:387129/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAGGTCGAGCCAGCGCAGGCGGCGGGATTTCTTGTGGCGTACGGTGCCGAATTCCAGGCGGCGCATGAACGGCGCATAGAGCACGGTGCCGGAGACAATCGCGACAATGAACAATACGCCCATGAAGGCCAGCAGCAGCTTGCCCGGCAGGCCTGCGAACATGTCCACATGCAGGCGCAGCATCACCATCATGAATCCACCATTGGCGGCCGGCATGGCCACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/424734‑424959 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaccgccAGCACCGACCCCAACCTGTCGCACACCTTCATGCTCGATGCACGCACCGGCGAGGCGGTGGCCATGCCGGCCGCCAATGGTGGATTCATGATGGTGATGCTGCGCCTGCATGTGGACATGTTCGCAGGCCTGCCGGGCAAGCTGCTGCTGGCCTTCATGGGCGTATTGTTCATTGTCGCGATTGTCTCCGGCACCGTGCTCTATGCGCCGTTCATGCGCCGCCTGGAATTCGGCA  <  AE015451/425012‑424778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.