New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 519036	29 (0.660)	5 (0.120)	4/328	NT	15.9%	coding (425/1035 nt)	argC	N‑acetyl‑gamma‑glutamyl‑phosphate reductase 1
	?	AE015451	= 519107	25 (0.600)					coding (496/1035 nt)	argC	N‑acetyl‑gamma‑glutamyl‑phosphate reductase 1

TCTGGGGGCCTGCGATGTGGTGTTCTTCGCCACTCCGCATGGTGTTGCACACGCCCTGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/518806‑519036 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggcCCGCCTCCAGCAGCGGAAGGAAGCCCAGCTGGGTTGCAGTCGGGTAGCAACCCGGCACAGCGATGAGGCGTGCCTGGCGGATCTTCTCGCGGTTGACTTCGGGCAGGCCATAGACTGCGTCCTTGAGCAGCTCTGGCGCGCCATGGGGCTGACCGTACCACTTGCCCCACTCAGTGGCATCCTGCAGACGGAAGTCGGCCGACAG  <  AE015451/519107‑518903                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCTGGGGGCCTGCGATGTGGTGTTCTTCGCCACTCCGCATGGTGTTGCACACGCCCTGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAG                                                                                                                                                                                                                 <  1:278011/229‑1                                                          GGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAG                                                                                                                                                                                                                 >  1:291253/1‑172                                                          GGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAG                                                                                                                                                                                                                 <  2:291251/172‑1                                                                                                      CGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAG                                                                                                                                                                                                                 <  1:120368/128‑1                                                                                                      CGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAG                                                                                                                                                                                                                 >  2:120366/1‑128                                                                                                                                                                                             TCTATGGCCTGCCCGAAGTCAACCGCGCGAAGATCCGCCAGGCCCGCCTCCAGCAGCGGAAGGAAGCCCAGCTGGGTTGCAGTCGGGTAGCAACCCG                                                                                                                                                         <  2:673804/97‑1                                                                                                                                                                                             TCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCCCGCCTCCAGCAGCGGAAGGAAGCCCAGCTGGGTTGCAGTCGGGTAGCAACCCG                                                                                                                                                         >  1:673806/1‑97                                                                                                                                                                                                          CGAAGTCAACCGCGAGAAGATCCGCCAGGCCCGCCTCCAGCAGCGGAAGGAAGCCCAGCTGGGTTGCAGTCGGGTAGCAACCCGGCACAGCGATGAGGCGTGCCTGGCGGATCTTCTCGCGGTTGACTTCGGGCAGGCCATAGACTGCGTCCTTGAGCAGCTCTGGCGCGCCATGGGGCTGACCGTACCACTTGCCCCACTCAGTGGCATCCTGCAGACGGAAGTCGGTCGACct  >  1:591808/1‑233                                                                                                                                                                                                          CGAAGTCAACCGCGAGAAGATCCGCCAGGCCCGCCTCCAGCAGCGGAAGGAAGCCCAGCTGGGTTGCAGTCGGGTAGCAACCCGGCACAGCGATGAGGCGTGCCTGGCGGATCTTCTCGCGGTTGACTTCGGGCAGGCCATAGACTGCGTCCTTGAGCAGCTCTGGCGCGCCATGGGGCTGACCGTACCACTTGCCCCACTCAGTGGCATCCTGCAGACGGAAGTCGGC        >  1:697757/1‑229                                                                                                                                                                                                          CGAAGTCAACCGCGAGAAGATCCGCAAGGCCCGCCTCCAGCAGCGGAAGGAAGCCCAGCTGGGTTGCAGTCGGGTAGCAACCCGGCACAGCGATGAGGCGTGCCTGGCGGATCTTCTCGCGGTTGACTTCGGGCAGGCCATAGACTGCGTCCTTGAGCAGCTCTGGCGCGCCATGGGGCTGACCGTACCACTTGCCCCACTCAGTGGCATCCTGCAGAC                  <  2:591806/219‑1                                                                                                                                                                                                                                  CCAGGCCCGCCTCCAGCAGCGGAAGGAAGCCCAGCTGGGTTGCAGTCGGGTAGCAACCCGGCACAGCGATGAGGCGTGCCTGGCGGATCTTCTCGCGGTTGACTTCGGGCAGGCCATAGACTGCGTCCTTGAGCAGCTCTGGCGCGCCATGGGGCTGACCGTACCACTTGCCCCACTCAGTG                               >  2:804959/1‑182                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCTGGGGGCCTGCGATGTGGTGTTCTTCGCCACTCCGCATGGTGTTGCACACGCCCTGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/518806‑519036 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggcCCGCCTCCAGCAGCGGAAGGAAGCCCAGCTGGGTTGCAGTCGGGTAGCAACCCGGCACAGCGATGAGGCGTGCCTGGCGGATCTTCTCGCGGTTGACTTCGGGCAGGCCATAGACTGCGTCCTTGAGCAGCTCTGGCGCGCCATGGGGCTGACCGTACCACTTGCCCCACTCAGTGGCATCCTGCAGACGGAAGTCGGCCGACAG  <  AE015451/519107‑518903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.