New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 519036	29 (0.660)	5 (0.120)	4/328	NT	15.9%	coding (425/1035 nt)	argC	N‑acetyl‑gamma‑glutamyl‑phosphate reductase 1
	?	AE015451	= 519107	25 (0.600)					coding (496/1035 nt)	argC	N‑acetyl‑gamma‑glutamyl‑phosphate reductase 1

GGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGCGCCTGGCCGCGGGCAAGGACATCGGCCTGACTTTCGTGCCGCAC  >  AE015451/518885‑519313                                                                                                                                                                                                                               |                                                                                                                                                                                                               ggCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGAcc                                                                                                                                                                                                    <  1:770143/235‑1 (MQ=255)                   aggtcGACCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGgcctggcggatcttctcgcggttgacttcg                                                                                                                                                                                  >  1:591808‑M2/3‑205 (MQ=255)                       cGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTg                                                                                                                                                                              >  1:690903/1‑235 (MQ=255)                         gCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGgcctggcggatcttctcgcggttgacttcg                                                                                                                                                                                  >  1:697757‑M2/1‑199 (MQ=255)                                   gTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGgccttgcggatcttctcgcggttgacttcg                                                                                                                                                                                  <  2:591806‑M2/219‑31 (MQ=255)                                                cACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGgcctgg                                                                                                                                                                                                          >  2:804959‑M2/1‑176 (MQ=255)                                                        ggggCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCt                                                                                                                                                        <  2:705730/224‑1 (MQ=255)                                                         gggCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCg                                                                                                                                            <  1:348203/235‑1 (MQ=255)                                                               gTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTgg                                                                                                                                     >  1:358406/1‑236 (MQ=255)                                                                    aCGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGAc                                                                                                                                                                                >  2:36464/1‑188 (MQ=255)                                                                        tCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCgtg                                                                                                                                                 >  2:422874/1‑215 (MQ=255)                                                                                         cAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGaa                                                                                                           >  1:604440/1‑236 (MQ=255)                                                                                          agagCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAgc                                                                                                                                                              >  1:699241/1‑184 (MQ=255)                                                                                                 ctCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGATTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGaa                                                                                                   >  1:445000/1‑236 (MQ=255)                                                                                                              tCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTg                                                                                                                                                                                         >  1:175332/1‑137 (MQ=255)                                                                                                              tCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCgg                                                                                        >  2:726370/1‑234 (MQ=255)                                                                                                                     ccTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGc                                                                                >  1:686880/1‑235 (MQ=255)                                                                                                                           cGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGAccccccg                                                                                                                                                                                               >  2:125074/1‑114 (MQ=255)                                                                                                                           cGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCg                                                                                                                                            >  2:681374/1‑169 (MQ=255)                                                                                                                           cGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATc                                                                            >  2:455236/1‑233 (MQ=255)                                                                                                                           cGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGCCGGGCCTGGCTGACCCGt                                                                                                                                                                                                 >  2:26783/1‑116 (MQ=255)                                                                                                                                  aaCCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCgg                                                                                        <  1:759216/214‑1 (MQ=255)                                                                                                                                                            ccTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGTGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGCGCCTGG                                        <  1:434810‑M1/236‑1 (MQ=255)                                                                                                                                                                 tCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGgtgt                                                                                                                                                                  <  1:22716/109‑1 (MQ=255)                                                                                                                                                                          cGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGgcctggcggatcttctcgcggttgacttcgggcaggccataga                                                                                                                                                                     >  1:673806‑M2/1‑54 (MQ=255)                                                                                                                                                                          cGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGgcctggcggatcttcgcgcggttgacttcgggcaggccataga                                                                                                                                                                     <  2:673804‑M2/97‑44 (MQ=255)                                                                                                                                                                                    cccGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAgg                                                    >  1:703008/1‑200 (MQ=255)                                                                                                                                                                                          tGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGCGCCTGGCCGCGGGCAAGGACATCGGCCTGACTTTc           >  1:728299/1‑235 (MQ=255)                                                                                                                                                                                          tGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGGGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCt                                                >  1:246632/1‑198 (MQ=255)                                                                                                                                                                                             aaCCCAGCTGGGCTTCCGTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCa                                                          <  1:45323/185‑1 (MQ=255)                                                                                                                                                                                               cccAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAGGGCGGGTGTCCGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGGGGCCGGCGGAAGCATGAAAGCCTACGCGGTAAAGGGc                                                                                >  2:239644/1‑161 (MQ=255)                                                                                                                                                                                               cccAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGC                                              <  1:177101‑M1/195‑1 (MQ=255)                                                                                                                                                                                                                     gctgGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGCGCCTGGCCGCGGGCAAGGACATCGGCCTGACTTTCGTGCCGCAc  >  2:433424/1‑217 (MQ=255)                                                                                                                                                                                                                     gctgGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGC                                              >  2:596833‑M1/1‑173 (MQ=255)                                                                                                                                                                                                                      ctgGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGCGCCTGGCCGCGGGCAAGGACATCGGCCTGACTTTCGTg        <  2:690901/210‑1 (MQ=255)                                                                                                                                                                                                                               |                                                                                                                                                                                                               GGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGCCACTTGCCGGAGATCAGCCAGGGCCTGCGCCTGGCCGCGGGCAAGGACATCGGCCTGACTTTCGTGCCGCAC  >  AE015451/518885‑519313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.