New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 519036	29 (0.660)	5 (0.120)	4/328	NT	15.9%	coding (425/1035 nt)	argC	N‑acetyl‑gamma‑glutamyl‑phosphate reductase 1
	?	AE015451	= 519107	25 (0.600)					coding (496/1035 nt)	argC	N‑acetyl‑gamma‑glutamyl‑phosphate reductase 1

TGTGGTGTTCTTCGCCACTCCGCATGGTGTTGCACACGCCCTGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGC  >  AE015451/518821‑519241                                                                                                                                                                                                                        |                                                                                                                                                                                                              tgtgGTGTTCTTCGCCACTCCGCATGGTGTTGCACACGCCCTGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCtgt                                                                                                                                                                                                <  1:180040/231‑1 (MQ=255)                     cGCATGGTGTTGCACCCGCCATGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCt                                                                                                                                                                                     <  1:183026/222‑1 (MQ=255)                         tGGTGTTGCACACGCCCTGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCtgt                                                                                                                                                                                                <  1:470064/207‑1 (MQ=255)                              ttGCACACGCCCTGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCCCTGTGCCGGGtt                                                                                                                                                                                        >  1:575156/1‑210 (MQ=255)                                 cacaCGCCCTGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGcttc                                                                                                                                                           >  1:217041/1‑236 (MQ=255)                                       cccTGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCa                                                                                                                                                                                                       <  2:652401/186‑1 (MQ=255)                                         cTGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCt                                                                                                                                                                                                  >  2:465615/1‑189 (MQ=255)                                         cTGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTACAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCAt                                                                                                                                                                                                      >  2:366138/1‑185 (MQ=255)                                                   aGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCCGCGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTc                                                                                                                                                                                                        >  2:135754/1‑173 (MQ=255)                                                         tgGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCtgtg                                                                                                                                                                                               >  2:629690/1‑176 (MQ=255)                                                                 ggCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGAcc                                                                                                                            <  1:770143/235‑1 (MQ=255)                                                                                   aggtcGACCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGgcctggcggatcttctcgcggttgacttcg                                                                                                          >  1:591808‑M2/3‑205 (MQ=255)                                                                                       cGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTg                                                                                                      >  1:690903/1‑235 (MQ=255)                                                                                         gCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGgcctggcggatcttctcgcggttgacttcg                                                                                                          >  1:697757‑M2/1‑199 (MQ=255)                                                                                                   gTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGgccttgcggatcttctcgcggttgacttcg                                                                                                          <  2:591806‑M2/219‑31 (MQ=255)                                                                                                                cACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGgcctgg                                                                                                                                  >  2:804959‑M2/1‑176 (MQ=255)                                                                                                                        ggggCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCt                                                                                <  2:705730/224‑1 (MQ=255)                                                                                                                         gggCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCg                                                                    <  1:348203/235‑1 (MQ=255)                                                                                                                               gTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTgg                                                             >  1:358406/1‑236 (MQ=255)                                                                                                                                    aCGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGAc                                                                                                        >  2:36464/1‑188 (MQ=255)                                                                                                                                        tCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCgtg                                                                         >  2:422874/1‑215 (MQ=255)                                                                                                                                                         cAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGaa                                   >  1:604440/1‑236 (MQ=255)                                                                                                                                                          agagCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAgc                                                                                      >  1:699241/1‑184 (MQ=255)                                                                                                                                                                 ctCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGATTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGaa                           >  1:445000/1‑236 (MQ=255)                                                                                                                                                                              tCTATGGCCTGCCCGAAGTCAACCGCGCGAAGATCCGCCAGGCccgcctccagcagcggaaggaagcccagctgggttgcagtcgggtagcaacccg                                                                                                                                                         <  2:673804‑M1/97‑55 (MQ=255)                                                                                                                                                                              tCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCccgcctccagcagcggaaggaagcccagctgggttgcagtcgggtagcaacccg                                                                                                                                                         >  1:673806‑M1/1‑43 (MQ=255)                                                                                                                                                                              tCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTg                                                                                                                 >  1:175332/1‑137 (MQ=255)                                                                                                                                                                              tCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCgg                >  2:726370/1‑234 (MQ=255)                                                                                                                                                                                   ggCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCTGGCACGCGTCATCGCTGTGCCGGGTTGCGACCCGACTGCCAGCCAGCTGGGCTTCCTTCCGCTGCTGGAg                                                                                                                                            >  2:383813/1‑105 (MQ=255)                                                                                                                                                                                     ccTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGc        >  1:686880/1‑235 (MQ=255)                                                                                                                                                                                           cGAAGTCAACCGCGAGAAGATCCGCCAGGCccgcctccagcagcggaaggaagcccagctgggttgcagtcgggtagcaacccggcacagcgatgaggcgtgcctggcggatcttctcgcggttgacttcgggcaggccatagactgcgtccttgagcagctctggcgcgccatggggctgaccgtaccacttgccccactcagtggcatcctgcagacggaagtcggtcgacct  >  1:591808‑M1/1‑30 (MQ=255)                                                                                                                                                                                           cGAAGTCAACCGCGAGAAGATCCGCCAGGCccgcctccagcagcggaaggaagcccagctgggttgcagtcgggtagcaacccggcacagcgatgaggcgtgcctggcggatcttctcgcggttgacttcgggcaggccatagactgcgtccttgagcagctctggcgcgccatggggctgaccgtaccacttgccccactcagtggcatcctgcagacggaagtcggc        >  1:697757‑M1/1‑30 (MQ=255)                                                                                                                                                                                           cGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGAccccccg                                                                                                                       >  2:125074/1‑114 (MQ=255)                                                                                                                                                                                           cGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCg                                                                    >  2:681374/1‑169 (MQ=255)                                                                                                                                                                                           cGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATc    >  2:455236/1‑233 (MQ=255)                                                                                                                                                                                           cGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGCCGGGCCTGGCTGACCCGt                                                                                                                         >  2:26783/1‑116 (MQ=255)                                                                                                                                                                                           cGAAGTCAACCGCGAGAAGATCCGCAAGGCccgcctccagcagcggaaggaagcccagctgggttgcagtcgggtagcaacccggcacagcgatgaggcgtgcctggcggatcttctcgcggttgacttcgggcaggccatagactgcgtccttgagcagctctggcgcgccatggggctgaccgtaccacttgccccactcagtggcatcctgcagac                  <  2:591806‑M1/219‑190 (MQ=255)                                                                                                                                                                                                  aaCCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCgg                <  1:759216/214‑1 (MQ=255)                                                                                                                                                                                                                   ccAGGCccgcctccagcagcggaaggaagcccagctgggttgcagtcgggtagcaacccggcacagcgatgaggcgtgcctggcggatcttctcgcggttgacttcgggcaggccatagactgcgtccttgagcagctctggcgcgccatggggctgaccgtaccacttgccccactcagtg                               >  2:804959‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                        |                                                                                                                                                                                                              TGTGGTGTTCTTCGCCACTCCGCATGGTGTTGCACACGCCCTGGCCGGTGAGCTGCTGGCGGCTGGCACCAAGGTGATCGACCTGTCGGCCGACTTCCGTCTGCAGGATGCCACTGAGTGGGGCAAGTGGTACGGTCAGCCCCATGGCGCGCCAGAGCTGCTCAAGGACGCAGTCTATGGCCTGCCCGAAGTCAACCGCGAGAAGATCCGCCAGGCACGCCTCATCGCTGTGCCGGGTTGCTACCCGACTGCAACCCAGCTGGGCTTCCTTCCGCTGCTGGAGGCGGGCCTGGCTGACCCGTCGCGCCTGATCGCCGACTGCAAGTCGGGTGTCAGCGGCGCTGGTCGTGGTGCGGCAGTGGGCTCGCTGTTCTGCGAGGCCGGCGAAAGCATGAAAGCCTACGCGGTAAAGGGCCATCGC  >  AE015451/518821‑519241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.