New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1140585 =	29 (0.660)	3 (0.070)	3/326	NT	9.4%	coding (383/1254 nt)	arcA	arginine deiminase
	?	AE015451	1140624 =	30 (0.720)					coding (344/1254 nt)	arcA	arginine deiminase

GACCAGGCCAAGCGTGACCATTTCGACTTCGTCACCAAGATGCGCGAGCGTGGCGTGGATGTGCTGGAGATGCACAACCTGCTGACCGATATCGTGCAGAACAAAGAGGCGCTCAAGTGGATCCTCGACCGCAAGATCACCCCTGACACCGTCGGCGTAGGCCTGACCAACGAAGTGCGTAGCTGGCTCGAAGGCCTGGAGCCACGCCACCTGGCCGAATTCCTGATCGGCGGCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1140823‑1140585 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtggcTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTCGCGCATCTTGGTGACGAAGTCGAAATGGTCACGCTTGGCCTGGTCGACCCAGATCACGTCGTCGAACAGCAGTT  >  AE015451/1140624‑1140852                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GACCAGGCCAAGCGTGACCATTTCGACTTCGTCACCAAGATGCGCGAGCGTGGCGTGGATGTGCTGGAGATGCACAACCTGCTGACCGATATCGTGCAGAACAAAGAGGCGCTCAAGTGGATCCTCGACCGCAAGATCACCCCTGACACCGTCGGCGTAGGCCTGACCAACGAAGTGCGTAGCTGGCTCGAAGGCCTGGAGCCACGCCACCTGGCCGAATTCCTGATCGGCGGCG                                                                                                                                                                                                                                           <  1:753089/235‑1  ACCAGGCCAAGCGTGACCATTTCGACTTCGTCACCAAGATGCGCGAGCGTGGCGTGGATGTGCTGGAGATGCACAACCTGCTGACCGATATCGTGCAGAACAAAGAGGCGCTCAAGTGGATCCTCGACCGCAAGATCACCCCTGACACCGTCGGCGTAGGCCTGACCAACGAAGTGCGTAGCTGGCTCGAAGGCCTGGAGCCACGCCACCTGGCCGAATTCCTGATCGGCGGCG                                                                                                                                                                                                                                           <  2:428795/234‑1                                              GAGCGTGGCGTGGATGTGCTGGAGATGCACAACCTGCTGACCGATATCGTGCAGAACAAAGAGGCGCTCAAGTGGATCCTCGACCGCAAGATCACCCCTGACACCGTCGGCGTAGGCCTGACCAACGAAGTGCGTAGCTGGCTCGAAGGCCTGGAGCCACGCCACCTGGCCGAATTCCTGATCGGCGGCG                                                                                                                                                                                                                                           <  1:700683/190‑1                                              GAGCGTGGCGTGGATGTGCTGGAGATGCACAACCTGCTGACCGATATCGTGCAGAACAAAGAGGCGCTCAAGTGGATCCTCGACCGCAAGATCACCCCTGACACCGTCGGCGTAGGCCTGACCAACGAAGTGCGTAGCTGGCTCGAAGGCCTGGAGCCACGCCACCTGGCCGAATTCCTGATCGGCGGCG                                                                                                                                                                                                                                           >  2:700681/1‑190                                                        TGGATGTGCTGGAGATGCACAACCTGCTGACCGATATCGTGCAGAACAAAGAGGCGCTCAAGTGGATCCTCGACCGCAAGATCACCCCTGACACCGTCGGCGTAGGCCTGACCAACGAAGTGCGTAGCTGGCTCGAAGGCCTGGAGCCACGCCACCTGGCCGAATTCCTGATCGGCGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCC                                                                                                                                                                                        <  1:547807/231‑1                                                                           CAACCTGCTGACCGATATCGTGCAGAACAAAGAGGCGCTCAAGTGGATCCTCGACCGCAAGATCACCCCTGACACCGTCGGCGTAGGCCTGACCAACGAAGTGCGTAGCTGGCTCGAAGGCCTGGAGCCACGCCACCTGGCCGAATTCCTGATCGGCGGCGT                                                                                                                                                                                                                                          >  2:206581/1‑162                                                                                                         AGAGGCGCTCAAGTGGATCCTCGACCGCAAGATCACCCCTGACACCGTCGGCGTAGGCCTGACCAACGAAGTGCGTAGCTGGCTCGAAGGCCTGGAGCCACGCCACCTGGCCGAATTCCTGATCGGCAGCGg                                                                                                                                                                                                                                          >  1:162875/1‑131                                                                                                                      TGGATCCTCGACCGCAAGATCACCCCTGACACCGTCGGCGTAGGCCTGACCAACGAAGTGCGTAGCTGGCTCGAAGGCCTGGAGCCACGCCACCTGGCCGAATTCCTGATCGGCGGCG                                                                                                                                                                                                                                           <  2:591743/118‑1                                                                                                                                                           GCGTAGGCCTGACCAACGAAGTGCGTAGCTGGCTCGAAGGCCTGGAGCCACGCCACCTGGCCGAATTCCTGATCGGCG                                                                                                                                                                                                                                              >  1:351721/1‑78                                                                                                                                                                                                         GCCACGCCACCTGGCCGAATTCCTGATCGGCGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGG                                                                                                                    <  1:428370/154‑1                                                                                                                                                                                                         GCCACGCCACCTGGCCGAATTCCTGATCGGCGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGG                                                                                                                    >  2:428368/1‑154                                                                                                                                                                                                                                        GGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTCGCGCATCTTGGTG                                                               >  2:703473/1‑176                                                                                                                                                                                                                                         GCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTCGCGCATCTTGGTGACGAAGTCGAAATGGTCACGCTTGGCCTGGTCGACCCAGATCACGTCGTCGAACAGCAGTT  >  1:585591/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GACCAGGCCAAGCGTGACCATTTCGACTTCGTCACCAAGATGCGCGAGCGTGGCGTGGATGTGCTGGAGATGCACAACCTGCTGACCGATATCGTGCAGAACAAAGAGGCGCTCAAGTGGATCCTCGACCGCAAGATCACCCCTGACACCGTCGGCGTAGGCCTGACCAACGAAGTGCGTAGCTGGCTCGAAGGCCTGGAGCCACGCCACCTGGCCGAATTCCTGATCGGCGGCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1140823‑1140585 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtggcTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTCGCGCATCTTGGTGACGAAGTCGAAATGGTCACGCTTGGCCTGGTCGACCCAGATCACGTCGTCGAACAGCAGTT  >  AE015451/1140624‑1140852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.