New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1140585 =	29 (0.660)	3 (0.070)	3/326	NT	9.4%	coding (383/1254 nt)	arcA	arginine deiminase
	?	AE015451	1140624 =	30 (0.720)					coding (344/1254 nt)	arcA	arginine deiminase

CGCCGGCCAGTACATCGGGTTCAACGTCACGCCGCCGTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTCGCGCATCTTGGTGACGAAGTCGAAATGGTCACGCTTGGCCTGGTCGACCCAGATCACGTCGTCGAACAGCAGTT  >  AE015451/1140416‑1140852                                                                                                                                                                                                                 |                                                                                                                                                                                                                                     cgcCGGCCAGTACATCGGGTTCAACGTCACGCCGCCGTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACt                                                                                                                                                                                                            <  1:581493/235‑1 (MQ=255)                     tCAACGTCACGCCGCCGTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGGGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCg                                                                                                                                                                                                                           <  1:25429/200‑1 (MQ=255)                      cAACGTCACGCCGCCGTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGa                                                                                                                                                                                      <  1:368873/236‑1 (MQ=255)                         tggatgtgctggagatgcacaacctgctgaccgatatcgtgcagaacaaagaggcgctcaagtggatcctcgaccgcaagatcacccctgacaccgtcggcgtaggcctgaccaacgaagtgcgtagctggctcgaaggcctggagccacgccacctggccgaattcctgatcggcggcgtggcTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGcc                                                                                                                                                                                        <  1:547807‑M2/47‑1 (MQ=255)                                                agGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTc                                                                                                                                                             >  1:738170/1‑235 (MQ=255)                                                      tgtCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATc                                                                                                                                                      >  1:503262/1‑236 (MQ=255)                                                       gtCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCGCCAGGCCTTCGAGCCAGCTACGCACTTc                                                                                                                                                                                                          >  1:195958/1‑183 (MQ=255)                                                                  aCTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCgg                                                                                                                                                               <  1:612793/215‑1 (MQ=255)                                                                           tGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATc                                                                                                                                                      >  1:108637/1‑215 (MQ=255)                                                                             ggCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACt                                                                                                                                                  >  1:418863/1‑217 (MQ=255)                                                                              gCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCt                                                                                                                                <  2:503260/234‑1 (MQ=255)                                                                                     tggCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGat                                                                                                                         >  2:668270/1‑234 (MQ=255)                                                                                            aTGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTAc                                                                                                                                                                                                                 >  2:687943/1‑139 (MQ=255)                                                                                            aTGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCAc                                                                                                                            >  1:60544/1‑224 (MQ=255)                                                                                               aaGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGCTCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAgg                                                                                                                                                         >  1:274554/1‑192 (MQ=255)                                                                                               aaGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCAc                                                                                                                            >  1:78702/1‑221 (MQ=255)                                                                                                        tGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTtgtg                                                                                                       >  2:550600/1‑233 (MQ=255)                                                                                                         ggCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGCCGgt                                                                                                                                                                                  >  1:264599/1‑157 (MQ=255)                                                                                                                  aGTCGTTGTACATCTTCACGACATCGGCGACTTCGCTTTGCGGCAGGTCATGGCCCGCCACGACGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGt                                                                                                                                                                         >  2:55878/1‑157 (MQ=255)                                                                                                                           ggcgtaggcctgaccaacgaagtgcgtagctggctcgaaggcctggaGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATcca                                                                                      <  1:547807‑M1/184‑1 (MQ=255)                                                                                                                             aTCTTCACGACATGGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCac                                                                                              >  2:437884/1‑220 (MQ=255)                                                                                                                                     gACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTg                                                                                                                                                                        >  2:424737/1‑139 (MQ=255)                                                                                                                                         tCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACtt                                                                                                                                                 <  2:738168/158‑1 (MQ=255)                                                                                                                                            gcgcCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGatat                                                                                                                       >  2:721276/1‑181 (MQ=255)                                                                                                                                                  tCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTCCGCCGACGGTGGCAGGGGTGATCTTGCGGTCGAggg                                                                                                                                                        >  1:91149/1‑141 (MQ=255)                                                                                                                                                           ggCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGcc                                                                                                                                          <  1:76155/147‑1 (MQ=255)                                                                                                                                                                      caccGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGGCAGCTACGCACTTCGTTGGTCAGGCCTACGcc                                                                                                                                                                                        <  2:75740/88‑1 (MQ=255)                                                                                                                                                                          gccacgccacctggccgaattcctgatcggcggcgtggcTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCgg                                                                                                                    >  2:428368‑M2/40‑154 (MQ=255)                                                                                                                                                                          gccacgccacctggccgaattcctgatcggcggcgtggcTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCgg                                                                                                                    <  1:428370‑M2/115‑1 (MQ=255)                                                                                                                                                                             cCGCTGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCctct                                                                                                                                       >  1:162875‑M1/2‑132 (MQ=255)                                                                                                                                                                             ACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTtg                                                                                                         >  2:206581‑M1/1‑162 (MQ=255)                                                                                                                                                                              CGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCa                                                                                                                                                    <  2:591743‑M1/118‑1 (MQ=255)                                                                                                                                                                              CGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTc                                                                            <  1:700683‑M1/190‑1 (MQ=255)                                                                                                                                                                              CGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTc                                                                            >  2:700681‑M1/1‑190 (MQ=255)                                                                                                                                                                              CGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTCGCGCATCTTGGTGACGAAGTCGAAATGGTCACGCTTGGCCTGGt                                <  2:428795‑M1/234‑1 (MQ=255)                                                                                                                                                                              CGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTCGCGCATCTTGGTGACGAAGTCGAAATGGTCACGCTTGGCCTGGTc                               <  1:753089‑M1/235‑1 (MQ=255)                                                                                                                                                                                 CGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGc                                                                                                                                                                                         >  1:351721‑M1/1‑78 (MQ=255)                                                                                                                                                                                      aTCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGcc                                                                                                                                                                                        >  2:540206/1‑74 (MQ=255)                                                                                                                                                                                      aTCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGcc                                                                                                                                                                                        <  1:540208/74‑1 (MQ=255)                                                                                                                                                                                         aGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACtt                                                                                                                                                 <  2:610971/110‑1 (MQ=255)                                                                                                                                                                                         aGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACtt                                                                                                                                                 >  1:610973/1‑110 (MQ=255)                                                                                                                                                                                              ttCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTCGCGCATCTTGGTGACGAAGTCGAAATGGTCACGCTTGGCCTGGTCGACCCAGATCAcgtcgt              >  1:230812/1‑236 (MQ=255)                                                                                                                                                                                                         ggcgtggcTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTCGCGCATCTTGGTg                                                               >  2:703473‑M2/9‑176 (MQ=255)                                                                                                                                                                                                          gcgtggcTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTCGCGCATCTTGGTGACGAAGTCGAAATGGTCACGCTTGGCCTGGTCGACCCAGATCACGTCGTCGAACAGCAGtt  >  1:585591‑M2/8‑236 (MQ=255)                                                                                                                                                                                                                 |                                                                                                                                                                                                                                     CGCCGGCCAGTACATCGGGTTCAACGTCACGCCGCCGTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCACGCCACGCTCGCGCATCTTGGTGACGAAGTCGAAATGGTCACGCTTGGCCTGGTCGACCCAGATCACGTCGTCGAACAGCAGTT  >  AE015451/1140416‑1140852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.