New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1140585 =	29 (0.660)	3 (0.070)	3/326	NT	9.4%	coding (383/1254 nt)	arcA	arginine deiminase
	?	AE015451	1140624 =	30 (0.720)					coding (344/1254 nt)	arcA	arginine deiminase

CTCGGTGAACTCCTTGTGGAACTTGTAGATGGCGGTGGTCAAAAGCGTTTCCTGGCGACGCGCCGGCCAGTACATCGGGTTCAACGTCACGCCGCCGTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCA  >  AE015451/1140356‑1140768                                                                                                                                                                                                                                      |                                                                                                                                                                                        aactgctgttcgacgacgtgatctgggtcgaccaggccaagcgtgaccatttcgacttcgtcaccaagatgcgcgagcgtggcgtggatgtgctggagatgcacaacctgctgaccgatatcgtgcagaacaaagaggcgctcaagtggatcctcgaccgcaagatcacccctgacaccgtcggcgtaggcctgaccaacgaagtgcgtagctggctcgaaggcctggaGCCAcgc                                                                                                                                                                                   >  1:585591‑M1/230‑236 (MQ=255)             cTTGTGGAACTTGTAGATGGCGGTGGTCAAAAGCGTTTCCTGGCGACGCGCCGGCCAGTACATCGGGTTCAACGTCACGCCGCCGTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGa                                                                                                                                                                       >  1:480907/1‑236 (MQ=255)                                                            gcgcCGGCCAGTACATCGGGTTCAACGTCACGCCGCCGTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGgtgg                                                                                                                                                         <  2:587784/203‑1 (MQ=255)                                                             cgcCGGCCAGTACATCGGGTTCAACGTCACGCCGCCGTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACt                                                                                                                        <  1:581493/235‑1 (MQ=255)                                                              caccaagatgcgcgagcgtggcgtggatgtgctggagatgcacaacctgctgaccgatatcgtgcagaacaaagaggcgctcaagtggatcctcgaccgcaagatcacccctgacaccgtcggcgtaggcctgaccaacgaagtgcgtagctggctcgaaggcctggaGCCAcgcc                                                                                                                                                                                  >  2:703473‑M1/169‑176 (MQ=255)                                                                                 tCAACGTCACGCCGCCGTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGGGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCg                                                                                                                                       <  1:25429/200‑1 (MQ=255)                                                                                  cAACGTCACGCCGCCGTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGa                                                                                                  <  1:368873/236‑1 (MQ=255)                                                                                             cgccgTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGgtggcg                                                                                                                                                       <  2:554977/172‑1 (MQ=255)                                                                                                            agGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTc                                                                         >  1:738170/1‑235 (MQ=255)                                                                                                                  tgtCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATc                                                                  >  1:503262/1‑236 (MQ=255)                                                                                                                   gtCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCGCCAGGCCTTCGAGCCAGCTACGCACTTc                                                                                                                      >  1:195958/1‑183 (MQ=255)                                                                                                                   ccgatatcgtgcagaacaaagaggcgctcaagtggatcctcgaccgcaagatcacccctgacaccgtcggcgtaggcctgaccaacgaagtgcgtagctggctcgaaggcctggaGCCACGCCGCCGATCAGGAATTCGGCCAGgtggcgtggc                                                                                                                                                   <  1:428370‑M1/39‑1 (MQ=255)                                                                                                                   ccgatatcgtgcagaacaaagaggcgctcaagtggatcctcgaccgcaagatcacccctgacaccgtcggcgtaggcctgaccaacgaagtgcgtagctggctcgaaggcctggaGCCACGCCGCCGATCAGGAATTCGGCCAGgtggcgtggc                                                                                                                                                   >  2:428368‑M1/116‑154 (MQ=255)                                                                                                                      gcgcgTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCAAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCgg                                                                                                                                                                 <  2:333104/137‑1 (MQ=255)                                                                                                                              aCTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCgg                                                                           <  1:612793/215‑1 (MQ=255)                                                                                                                                       tGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATc                                                                  >  1:108637/1‑215 (MQ=255)                                                                                                                                         ggCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACt                                                              >  1:418863/1‑217 (MQ=255)                                                                                                                                          gCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCt                                            <  2:503260/234‑1 (MQ=255)                                                                                                                                                 tggCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGat                                     >  2:668270/1‑234 (MQ=255)                                                                                                                                                        aTGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTAc                                                                                                                             >  2:687943/1‑139 (MQ=255)                                                                                                                                                        aTGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCAc                                        >  1:60544/1‑224 (MQ=255)                                                                                                                                                           aaGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGCTCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAgg                                                                     >  1:274554/1‑192 (MQ=255)                                                                                                                                                           aaGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCAc                                        >  1:78702/1‑221 (MQ=255)                                                                                                                                                                    tGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTtgtg                   >  2:550600/1‑233 (MQ=255)                                                                                                                                                                     ggCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGCCGgt                                                                                              >  1:264599/1‑157 (MQ=255)                                                                                                                                                                              aGTCGTTGTACATCTTCACGACATCGGCGACTTCGCTTTGCGGCAGGTCATGGCCCGCCACGACGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGt                                                                                     >  2:55878/1‑157 (MQ=255)                                                                                                                                                                                       ggcgtaggcctgaccaacgaagtgcgtagctggctcgaaggcctggaGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATcca  <  1:547807‑M1/184‑1 (MQ=255)                                                                                                                                                                                         aTCTTCACGACATGGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCac          >  2:437884/1‑220 (MQ=255)                                                                                                                                                                                               aCGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAAtt                                                                                                                                                                    <  2:82446/61‑1 (MQ=255)                                                                                                                                                                                                 gACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTg                                                                                    >  2:424737/1‑139 (MQ=255)                                                                                                                                                                                                     tCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACtt                                                             <  2:738168/158‑1 (MQ=255)                                                                                                                                                                                                        gcgcCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGatat                                   >  2:721276/1‑181 (MQ=255)                                                                                                                                                                                                              tCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTCCGCCGACGGTGGCAGGGGTGATCTTGCGGTCGAggg                                                                    >  1:91149/1‑141 (MQ=255)                                                                                                                                                                                                                       ggCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGcc                                                      <  1:76155/147‑1 (MQ=255)                                                                                                                                                                                                                                  caccGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGGCAGCTACGCACTTCGTTGGTCAGGCCTACGcc                                                                                                    <  2:75740/88‑1 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                        CTCGGTGAACTCCTTGTGGAACTTGTAGATGGCGGTGGTCAAAAGCGTTTCCTGGCGACGCGCCGGCCAGTACATCGGGTTCAACGTCACGCCGCCGTAGATCCAGCAGGTGGTGTCGCGCGTGAACTGGGTGTTGGGCAGTGGTGGCAGGATGAAGCTGGAGTGGCCCAGGTAGTCGTTGTACATCTTCACGACATCGGCGCCTTCGCTTTGCGGCAGGTCCTGGCCCGCCACGCCGCCGATCAGGAATTCGGCCAGGTGGCGTGGCTCCAGGCCTTCGAGCCAGCTACGCACTTCGTTGGTCAGGCCTACGCCGACGGTGTCAGGGGTGATCTTGCGGTCGAGGATCCACTTGAGCGCCTCTTTGTTCTGCACGATATCGGTCAGCAGGTTGTGCATCTCCAGCACATCCA  >  AE015451/1140356‑1140768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.