New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1161986	34 (0.780)	3 (0.070)	3/324	NT	8.3%	coding (949/1155 nt)	gtsD	mannose/glucose ABC transporter ‑ ATP binding subunit
	?	AE015451	= 1162087	34 (0.820)					coding (1050/1155 nt)	gtsD	mannose/glucose ABC transporter ‑ ATP binding subunit

CCGCCAATGAACTTCATTCCGGTGCGTCTGGCCAGGCAGGATGGCCGCTTGCTGGCGCTGCTCGACAGCGGCCAGGCGCGCTGCGAACTGCCCTTGGGGGAGGCTGCTGACGCGCTTGAGGGGCGCGAGATCATCCTCGGCATCCGCCCTGAGCAGATCGCCCTGGGCGCTGCTGACGGCAATGGTTTGCCGGCTATCCGCGCCGAGGTGCAGGTGACAGAGCCCACCGGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1161752‑1161986 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggccggGTCGAATTGCAGGTTGAGGGTGTCACCCACCCGGCACGCCACATCTGGCGCCAGGCGGCAGCACACCTTGGTCTGGTTGAGCGTGACGAACACCAGCAGGTCCGGCCCGGTGGGCTCTGTCACCTGCACCTCGGCGCGGATAGCCGGCAAACCATTGCCGTCAGCAGCGCCCAGGGCGATCTGCTCAGGGCGGATGCCGAG  <  AE015451/1162087‑1161887                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCGCCAATGAACTTCATTCCGGTGCGTCTGGCCAGGCAGGATGGCCGCTTGCTGGCGCTGCTCGACAGCGGCCAGGCGCGCTGCGAACTGCCCTTGGGGGAGGCTGCTGACGCGCTTGAGGGGCGCGAGATCATCCTCGGCATCCGCCCTGAGCAGATCGCCCTGGGCGCTGCTGACGGCAATGGTTTGCCGGCTATCCGCGCCGAGGTGCAGGTGACAGAGCCCACCGGGCCG                                                                                                                                                                                                            >  2:526169/1‑234                           TCTGGCCAGGCAGGATGGCCGCTTGCTGGCGCTGCTCGACAGCGGCCAGGCGCGCTGCGAACTGCCCTTGGGGGAGGCTGCTGACGCGCTTGAGGGGCGCGAGATCATCCTCGGCATCCGCCCTGAGCAGATCGCCCTGGGCGCTGCTGACGGCAATGGTTTGCCGGCTATCCGCGCCGAGGTGCAGGTGACAGAGCCCACCGGGCCG                                                                                                                                                                                                            <  2:621358/208‑1                                                                                                                                                                              TGACGGCAATGGTTTGCCGGCTATCCGCGCCGAGGTGCAGGTGACAGAGCCCACCGGGCCGGGTCGAATTGCAGGTTGAGGGTGTCACCCACC                                                                                                                                                                            <  1:378364/93‑1                                                                                                                                                                              TGACGGCAATGGTTTGCCGGCTATCCGCGCCGAGGTGCAGGTGACAGAGCCCACCGGGCCGGGTCGAATTGCAGGTTGAGGGTGTCACCCACC                                                                                                                                                                            >  2:378362/1‑93                                                                                                                                                                                                                 TGCAGGTGACAGAGCCCACCGGGCCGGGTCGAATTGCAGGTTGAGGGTGTCACCCACCCGGCACGCCACATCTGGCGCCAGGCGGCAGCACACCTTGGTCTGGTTGAGCGTGACGAACACCAGCAGGTCCGGCCCGGTGGGCTCTGTCACCTGCACCTCGGCGCG                                                                 >  1:644647/1‑165                                                                                                                                                                                                                                   CCGGGCCGGGTCGAATTGCAGGTTGAGGGTGTCACCCACCCGGCACGCCACATCTGGCGCCAGGCGGCAGCACACCTTGGTCTGGTTGAGCGTGACGAACACCAGCAGGTCCGGCCCGGTGGGCTCTGTCACCTGCACCTCGGCGCGGATAGCCGGCAAACCATTGCCGTCAGCAGCGCCCAGGGCGATCTGCTCAGGGCGGATGCCGAG  >  2:755733/1‑210                                                                                                                                                                                                                                          GGGTCGAATTGCAGGTTGAGGGTGTCACCCACCCGGCACGCCACATCTGGCGCCAGGCGGCAGCACACCTTGGTCTGGTTGAGCGTGACGAACACCAGCAGGTCCGGCCCGGTGGGCTCTGTCACCTGCACCTCGGCGCGGATAGCCGGCAAACCATTGCCGTCAGCAGCGCGCAGGGCGATCTGC                   >  2:465668/1‑186                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCGCCAATGAACTTCATTCCGGTGCGTCTGGCCAGGCAGGATGGCCGCTTGCTGGCGCTGCTCGACAGCGGCCAGGCGCGCTGCGAACTGCCCTTGGGGGAGGCTGCTGACGCGCTTGAGGGGCGCGAGATCATCCTCGGCATCCGCCCTGAGCAGATCGCCCTGGGCGCTGCTGACGGCAATGGTTTGCCGGCTATCCGCGCCGAGGTGCAGGTGACAGAGCCCACCGGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1161752‑1161986 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggccggGTCGAATTGCAGGTTGAGGGTGTCACCCACCCGGCACGCCACATCTGGCGCCAGGCGGCAGCACACCTTGGTCTGGTTGAGCGTGACGAACACCAGCAGGTCCGGCCCGGTGGGCTCTGTCACCTGCACCTCGGCGCGGATAGCCGGCAAACCATTGCCGTCAGCAGCGCCCAGGGCGATCTGCTCAGGGCGGATGCCGAG  <  AE015451/1162087‑1161887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.