New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1260838 =	37 (0.850)	3 (0.070)	3/326	NT	8.1%	coding (613/2451 nt)	PP_1103	ATP‑dependent helicase, DEAD box family
	?	AE015451	1260901 =	33 (0.790)					coding (550/2451 nt)	PP_1103	ATP‑dependent helicase, DEAD box family

TCACCACCCCCGAAAGCCTGACCCTGCTGCTGACCCGGGCAAAGGCACGTGAGGATTTCGCCACGCTGCAACTGGTGGTGGTGGATGAATGGCACGAGCTGCTTGGCAACAAGCGCGGGGTACAACTGCAGCTGGCCTTGGCGCGCCTGCGGCATTGGCACCCGGGCCTACCGACCTGGGGCTTGTCGGCAACCCTCGGCAACCTGCAACACGCACGGGATGTCTTGCTGCCCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1261074‑1260838 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccccaggTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAGGCCAGCTGCAGTTGTACCCCGCGCTTGTTGCCAAGCAGCTCGTGCCATTCATCCACCACCACCAGTTGCAGCGTGGCGAAATCCTCACGTGCCTTTGCCCGGGTCAGCAGCAGGGTCAGGCTTTCGGGGGTGGTGATCAGCACACTGGGTAGCCGCCGGGCCTGTCGGGCGCGCTCGGCACTGTTGGTGT  >  AE015451/1260901‑1261128                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCACCACCCCCGAAAGCCTGACCCTGCTGCTGACCCGGGCAAAGGCACGTGAGGATTTCGCCACGCTGCAACTGGTGGTGGTGGATGAATGGCACGAGCTGCTTGGCAACAAGCGCGGGGTACAACTGCAGCTGGCCTTGGCGCGCCTGCGGCATTGGCACCCGGGCCTACCGACCTGGGGCTTGTCGGCAACCCTCGGCAACCTGCAACACGCACGGGATGTCTTGCTGCCCCcg                                                                                                                                                                                                                                       >  1:181475/1‑234                                                   GAGGATTTCGCCACGCTGCAACTGGTGGTGGTGGATGAATGGCACGAGCTGCTTGGCAACAAGCGCGGGGTACAACTGCAGCTGGCCTTGGCGCGCCTGCGGCATTGGCACCCGGGCCTACCGACCTGGGGCTTGTCGGCAACCCTCGGCAACCTGCAACACGCACGGGATGTCTTGCTG                                                                                                                                                                                                                                             <  2:381681/180‑1                                                          TCGCCACGCTGCAACTGGTGGTGGTGGATGAATGGCACGAGCTGCTTGGCAACAAGCGCGGGGTACAACTGCAGCTGGCCTTGGCGCGCCTGCGGCATTGGCACCCGGGCCTACCGACCTGGGGCTTGTCGGCAACCCTCGGCAACCTGCAACACGCACGGGATGTCTTGCTGC                                                                                                                                                                                                                                            >  2:691819/1‑174                                                                                                         GGCAACAAGCGCGGGGTACAACTGCAGCTGGCCTTGGCGCGCCTGCGGCATTGGCACCCGGGCCTACCGACCTGGGGCTTGTCGGCAACCCTCGGCAACCTGCAACACGCACGGGATGTCTTGCTGCCCCAGGTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAGGCC                                                                                                                                                                                             <  1:553011/174‑1                                                                                                                                      GGCCTTGGCGCGCCTGCGGCATTGGCACCCGGGCCTACCGACCTGGGGCTTGTCGGCAACCCTCGGCAACCTGCAACACGCACGGGATGTCTTGCTGCCCCAG                                                                                                                                                                                                                                       >  2:436314/1‑103                                                                                                                                                                                     gcgTGTCGGCAACCCTCGGCAACCTGCAACACGCACGGGATGTCTTGCTGCCCCAGGGCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAGGCCAGCTGCAGTTGTACCCCGCGCTTGTTGCCAAGC                                                                                                                                                            <  1:429602/128‑1                                                                                                                                                                                                  CCTCGGCAACCTGCAACACGCACGGGATGTCTTGCTGCCCCAGGTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAG                                                                                                                                                                                                <  1:263391/82‑1                                                                                                                                                                                                                                       CCCCAGGTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAGGCCAGCT‑CAGTTGTACCCCGCGCTTGTTGCCAAGCAGCTCGTGCCATTCATCCACCACCACCAGTTGCAGCGTGGCGAAATCCTCACGTGCCTTTGCCCGGGTCAGCAGCAGGGTCAGGCTTTCGGGGGTGGTGATCAGCACACTGGGTAGCCGCCGGGCCTGTCGGGCGCGCTCGGCACTGCTGGCGT  >  1:203860/1‑234                                                                                                                                                                                                                                       CCCCAGGTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAAGCCAGCTGCAGTTGTACCCCGCGCTTGTTGCCAAGCAGCTCGTGCCATTCATCCACCACCACCAGTTGCAGCGTGGCGAAATCCTCACGTGCCTTTGCCCGGGTCAGCAGCAGGGTCAGGCTTTCGGGGGTGGTGATCAGCACACTGGGTAGCCGCCGGGCCTGTCGGGCGCGCTCGG              >  1:792821/1‑223                                                                                                                                                                                                                                          CAGGTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAGGCCAGCGGCAGTTGTACCCCGCGCTTGTTGCCAAGCAGCTCGTGCCATTCATCCACCACCCCCA                                                                                                                                <  2:500363/106‑1                                                                                                                                                                                                                                             GTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAGGCCAGCTGCAGTTGTACCCCGCGCTTGTTGCCAAGCAGCTCGTGCCATTCATCCACCACCACCAGTTGCAGCGTGGCGAAATCCTCACGTGCCTTTGCCCGGGTCAGCAGCAGGGTCAGGCTTT                                                                    <  2:553009/163‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCACCACCCCCGAAAGCCTGACCCTGCTGCTGACCCGGGCAAAGGCACGTGAGGATTTCGCCACGCTGCAACTGGTGGTGGTGGATGAATGGCACGAGCTGCTTGGCAACAAGCGCGGGGTACAACTGCAGCTGGCCTTGGCGCGCCTGCGGCATTGGCACCCGGGCCTACCGACCTGGGGCTTGTCGGCAACCCTCGGCAACCTGCAACACGCACGGGATGTCTTGCTGCCCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1261074‑1260838 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccccaggTCGGTAGGCCCGGGTGCCAATGCCGCAGGCGCGCCAAGGCCAGCTGCAGTTGTACCCCGCGCTTGTTGCCAAGCAGCTCGTGCCATTCATCCACCACCACCAGTTGCAGCGTGGCGAAATCCTCACGTGCCTTTGCCCGGGTCAGCAGCAGGGTCAGGCTTTCGGGGGTGGTGATCAGCACACTGGGTAGCCGCCGGGCCTGTCGGGCGCGCTCGGCACTGTTGGTGT  >  AE015451/1260901‑1261128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.