New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2336488 =	22 (0.500)	3 (0.070)	3/324	NT	14.7%	intergenic (‑32/+48)	PP_2052/PP_5500	putative bifunctional enzyme: sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/protein of unknown function
	?	AE015451	2336509 =	14 (0.340)					intergenic (‑53/+27)	PP_2052/PP_5500	putative bifunctional enzyme: sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/protein of unknown function

GTATCCATCGCTATTTGCGCCCACTGCCTGCAAAACCGACTGCAGCCAGTGGGCGTGACCTCAAGGCCAAACGCGCCACCCACCTCGCCGCAACGGTTGCCAACCTCCTCTGCACGCCCCGCTCCGCCCCGCCTTACCTCTGCGTCACTCCTGAGCGTCCCCCTGTCGAACGTGTGCCCCCGACCTGACTGCCCCCACTGCAGCTCACACACCGTTCTCGCCTGTTGCAGGCGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2336723‑2336488 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgagaACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGA  >  AE015451/2336509‑2336729                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTATCCATCGCTATTTGCGCCCACTGCCTGCAAAACCGACTGCAGCCAGTGGGCGTGACCTCAAGGCCAAACGCGCCACCCACCTCGCCGCAACGGTTGCCAACCTCCTCTGCACGCCCCGCTCCGCCCCGCCTTACCTCTGCGTCACTCCTGAGCGTCCCCCTGTCGAACGTGTGCCCCCGACCTGACTGCCCCCACTGCAGCTCACACACCGTTCTCGCCTGTTGCAGGCGAGA                                                                                                                                                                                                                               <  1:597062/236‑1                                                                                       GCCGCAACGGTTGCCAACCTCCTCTGCACGCCCCGCTCCGCCCCGCCTTACCTCTGCGTCACTCCTGAGCGTCCCCCTGTCGAACGTGTGCCCCCGACCTGACTGCCCCCACTGCAGCTCACACACCGTTCTCGCCTGTTGCAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGG                                                                                                                                                                         <  1:652983/204‑1                                                                                                                                                       CTGAGCGTCCCCCTGTCGAACGTGTGCCCCCGACCTGACTGCCCCCACTGCAGCTCACACACCGTTCTCGCCTGTTGCAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGG                                                                                                                                                                                         >  1:730796/1‑124                                                                                                                                                       CTGAGCGTCCCCCTGTCGAACGTGTGCCCCCGACCTGACTGCCCCCACTGCAGCTCACACACCGTTCTCGCCTGTTGCAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGG                                                                                                                                                                                         <  2:730794/124‑1                                                                                                                                                                                                                                       GCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGA  <  2:637499/227‑1                                                                                                                                                                                                                                            AACGGTGTGTGAGCGGCAGTGGGGGCGGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACC                                                                                                      <  2:80110/122‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTATCCATCGCTATTTGCGCCCACTGCCTGCAAAACCGACTGCAGCCAGTGGGCGTGACCTCAAGGCCAAACGCGCCACCCACCTCGCCGCAACGGTTGCCAACCTCCTCTGCACGCCCCGCTCCGCCCCGCCTTACCTCTGCGTCACTCCTGAGCGTCCCCCTGTCGAACGTGTGCCCCCGACCTGACTGCCCCCACTGCAGCTCACACACCGTTCTCGCCTGTTGCAGGCGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2336723‑2336488 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgagaACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGA  >  AE015451/2336509‑2336729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.