New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2336488 =	22 (0.500)	3 (0.070)	3/324	NT	14.7%	intergenic (‑32/+48)	PP_2052/PP_5500	putative bifunctional enzyme: sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/protein of unknown function
	?	AE015451	2336509 =	14 (0.340)					intergenic (‑53/+27)	PP_2052/PP_5500	putative bifunctional enzyme: sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/protein of unknown function

TCAGGGTCTGCTCGCTCAGCGCTTTGCCGAAGATTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGT  >  AE015451/2336312‑2336744                                                                                                                                                                                                      |                                                                                                                                                                                                                                            gcAGGGTCTGCTCGCTCAGCGCTTTGCCGAAGATTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCgggg                                                                                                                                                                                                        <  1:315218/234‑1 (MQ=255)                                 aTTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTgg                                                                                                                                                                                                                         <  2:701663/186‑1 (MQ=255)                                 aTTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTgg                                                                                                                                                                                                                         >  1:701665/1‑186 (MQ=255)                                                gccgcaacggttgccaacctcctctgcacgccccgctccgccccgccttacctctgcgtcactcctgagcgtccccctgtcgaacgtgtgcccccgacctgactgcccccactgcagctcacacaccgttctcgcctgttgcaggcgagaACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAgg                                                                                                                                                                                        <  1:652983‑M2/54‑1 (MQ=255)                                                  cttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAggc                                                                                                                                                         <  1:386799/233‑1 (MQ=255)                                                     gAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGgtgt                                                                                                                                                                                                                                       <  2:62622/152‑1 (MQ=255)                                                                       gcgcTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGAc                                                                                                                                                                                   <  2:753404/186‑1 (MQ=255)                                                                       gcgcTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGAc                                                                                                                                                                                   >  1:753406/1‑186 (MQ=255)                                                                        cgcTTGGTGTCGAAGAGGTTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCATCAGGCGAGAACGGTGTGTGAGCTGCAGt                                                                                                                                                                                                                           <  1:609519/145‑1 (MQ=255)                                                                                       agGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCacac                                                                                                                                                                                                  <  2:344067/155‑1 (MQ=255)                                                                                                                ctgagcgtccccctgtcgaacgtgtgcccccgacctgactgcccccactgcagctcacacaccgttctcgcctgttgcaggcgagaACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCgggg                                                                                                                                                                                                        >  1:730796‑M2/87‑124 (MQ=255)                                                                                                                ctgagcgtccccctgtcgaacgtgtgcccccgacctgactgcccccactgcagctcacacaccgttctcgcctgttgcaggcgagaACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCgggg                                                                                                                                                                                                        <  2:730794‑M2/38‑1 (MQ=255)                                                                                                                cgcTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTgg                                                                                         >  1:543166/1‑235 (MQ=255)                                                                                                                   tGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCtt                                                                                     >  1:637501/1‑236 (MQ=255)                                                                                                                   tGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCt                                                                                      >  1:330839/1‑235 (MQ=255)                                                                                                                           cctgtcgaacgtgtgcccccgacctgactgcccccactgcagctcacacaccgtTCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTgcggc                                                                                                             <  1:652983‑M1/150‑1 (MQ=255)                                                                                                                                           ccccgacctgactgcccccactgcagctcacacaccgtTCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAg                                                                                                                                                                             >  1:730796‑M1/39‑124 (MQ=255)                                                                                                                                           ccccgacctgactgcccccactgcagctcacacaccgtTCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAg                                                                                                                                                                             <  2:730794‑M1/86‑1 (MQ=255)                                                                                                                                                             ccTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGa                                                                                                                                                                                                                                   <  2:455113/52‑1 (MQ=255)                                                                                                                                                                 gtggTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAggcgg                                                                                                                                                       <  1:2421/121‑1 (MQ=255)                                                                                                                                                                                 TCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATAc                       <  1:597062‑M1/236‑1 (MQ=255)                                                                                                                                                                                                gcgagaACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGa                 <  2:637499‑M2/221‑1 (MQ=255)                                                                                                                                                                                                     aACGGTGTGTGAGCGGCAGTGGGGGCGGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAAcc                                                                                                                     <  2:80110‑M2/121‑1 (MQ=255)                                                                                                                                                                                                      aCGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGt  <  1:285765/236‑1 (MQ=255)                                                                                                                                                                                                      |                                                                                                                                                                                                                                            TCAGGGTCTGCTCGCTCAGCGCTTTGCCGAAGATTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGT  >  AE015451/2336312‑2336744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.