New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2336488 =	22 (0.500)	3 (0.070)	3/324	NT	14.7%	intergenic (‑32/+48)	PP_2052/PP_5500	putative bifunctional enzyme: sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/protein of unknown function
	?	AE015451	2336509 =	14 (0.340)					intergenic (‑53/+27)	PP_2052/PP_5500	putative bifunctional enzyme: sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/protein of unknown function

GTTATGCGCCTTGGCGAGGGCTTCGGCCTTTTTTGCGCTCAGGCCCAGCGAGCCAATCAGGGTCTGCTCGCTCAGCGCTTTGCCGAAGATTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATAC  >  AE015451/2336256‑2336723                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                            gTTATGCGCCTTGGCGAGGGCTTCGGCCTTTTTTGCGCTCAGGCCCAGCGAGCCAATCAGGGTCTGCTCGCTCAGCGCTTTGCCGAAGATTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCAtctc                                                                                                                                                                                                                                          <  1:155860/236‑1 (MQ=255)        gcCTTGGCGAGGGCTTCGGCCTTTTTTGCGCTCGGGCCCAGCGAGCCAATCAGGGTCTGCTCGCTCAGCGCTTTGCCGAAGATTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCa                                                                                                                                                                                                                                   <  1:459043/236‑1 (MQ=255)        gcCTTGGCGAGGGCTTCGGCCTTTTTTGCGCTCAGGCCCAGCGAGCCAATCAGGGTCTGCTCGCTCAGCGCTTTGCCGAAGATTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTg                                                                                                                                                                                                                                     <  1:366212/234‑1 (MQ=255)            tcacacgtatccatcgctatttgcgcccactgcctgcaaaaccgactgcagccagtgggcgtgacctcaaggccaaacgcgccacccacctcgccgcaacggttgccaacctcctctgcacgccccgctccgccccgccttacctctgcgtcactcctgagcgtccccctgtcgaacgtgtgcccccgacctgactgcccccactgcagctcacacaccgtTCTCGc                                                                                                                                                                                                                                        <  2:637499‑M1/6‑1 (MQ=255)                                           gCCCAGCGAGCCAATCAGGGTCTGCTCGCTCAGCGCTTTGCCGAAGATTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAAc                                                                                                                                                                                                                                 <  2:239248/203‑1 (MQ=255)                                                        aTCAGGGTCTGCTCGCTCAGCGCTTTGCCGAAGATTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCgag                                                                                                                                                                                                                          >  2:804120/1‑197 (MQ=255)                                                        aTCAGGGTCTGCTCGCTCAGCGCTTTGCCGAAGATTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCgag                                                                                                                                                                                                                          <  1:804122/197‑1 (MQ=255)                                                         gcAGGGTCTGCTCGCTCAGCGCTTTGCCGAAGATTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCgggg                                                                                                                                                                                   <  1:315218/234‑1 (MQ=255)                                                                                         aTTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTgg                                                                                                                                                                                                    <  2:701663/186‑1 (MQ=255)                                                                                         aTTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTgg                                                                                                                                                                                                    >  1:701665/1‑186 (MQ=255)                                                                                              cAGAGAAGCTTGCTTGCGTGTCCTGAAGCGCAGGCGCTAGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGc                                                                                                                                                                                                                             <  2:167969/156‑1 (MQ=255)                                                                                                          cttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAggc                                                                                                                                    <  1:386799/233‑1 (MQ=255)                                                                                                             gAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGgtgt                                                                                                                                                                                                                  <  2:62622/152‑1 (MQ=255)                                                                                                                ggttgccaacctcctctgcacgccccgctccgccccgccttacctctgcgtcactcctgagcgtccccctgtcgaacgtgtgcccccgacctgaccgcccccactgccgctcacacaccgtt                                                                                                                                                                                                                                             <  2:80110‑M1/1‑1 (MQ=255)                                                                                                                               gcgcTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGAc                                                                                                                                                              >  1:753406/1‑186 (MQ=255)                                                                                                                               gcgcTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGAc                                                                                                                                                              <  2:753404/186‑1 (MQ=255)                                                                                                                                cgcTTGGTGTCGAAGAGGTTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCATCAGGCGAGAACGGTGTGTGAGCTGCAGt                                                                                                                                                                                                      <  1:609519/145‑1 (MQ=255)                                                                                                                                               agGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCacac                                                                                                                                                                             <  2:344067/155‑1 (MQ=255)                                                                                                                                                              tCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCgag                                                                                                                                                                                                                          <  1:669857/95‑1 (MQ=255)                                                                                                                                                              tCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCgag                                                                                                                                                                                                                          >  2:669855/1‑95 (MQ=255)                                                                                                                                                                        cgcTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTgg                                                                    >  1:543166/1‑235 (MQ=255)                                                                                                                                                                           tGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCtt                                                                >  1:637501/1‑236 (MQ=255)                                                                                                                                                                           tGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCt                                                                 >  1:330839/1‑235 (MQ=255)                                                                                                                                                                                   cctgtcgaacgtgtgcccccgacctgactgcccccactgcagctcacacaccgtTCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTgcggc                                                                                        <  1:652983‑M1/150‑1 (MQ=255)                                                                                                                                                                                                   ccccgacctgactgcccccactgcagctcacacaccgtTCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAg                                                                                                                                                        >  1:730796‑M1/39‑124 (MQ=255)                                                                                                                                                                                                   ccccgacctgactgcccccactgcagctcacacaccgtTCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAg                                                                                                                                                        <  2:730794‑M1/86‑1 (MQ=255)                                                                                                                                                                                                                     ccTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGa                                                                                                                                                                                                              <  2:455113/52‑1 (MQ=255)                                                                                                                                                                                                                         gtggTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAggcgg                                                                                                                                  <  1:2421/121‑1 (MQ=255)                                                                                                                                                                                                                                         TCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATAc  <  1:597062‑M1/236‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                            GTTATGCGCCTTGGCGAGGGCTTCGGCCTTTTTTGCGCTCAGGCCCAGCGAGCCAATCAGGGTCTGCTCGCTCAGCGCTTTGCCGAAGATTTCCAGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATAC  >  AE015451/2336256‑2336723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.