New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 2776095 = | 35 (0.800) | 3 (0.070) | 3/318 | NT | 9.3% | coding (442/1227 nt) | sotB | Probable sugar efflux transporter |
? | AE015451 | 2776128 = | 26 (0.640) | coding (475/1227 nt) | sotB | Probable sugar efflux transporter |
CGCTTGAACAGGACCGGCAGGCTGCGCAACGAACCGGAGTTCTGGCTGGGCAGCAGCGGCAGCGATTTGATCAGGCAAAGCATGGTGGCTAGCGCTACCCCGGCAATGCTCAGGAACGTGATACGCCAGCCCAGTGCCTCGCCCACCACACGGCCCAGCGGGATGCCCAGGACCATGGCCAGGGTAGTACCGGTGGCCAGCAGGCCCAGCGCCTTGGCCTGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2776321‑2776095 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgctggccACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGG > AE015451/2776128‑2776167 CGCTTGAACAGGACCGGCAGGCTGCGCAACGAACCGGACTTCTGGCTGGGCAGCAGCGACAGCGATTTGATCAGGCAAAGCATGGTGGCTAGCGCTACCCCGGCAATGCTCAGGAACGTAATACGCCAGCCCAGTGCCTCGCCCACCACACGGCCCAGCGGGATGCCCAGGACCATGGCCAGGGTAGTACCGGTGGCCAGCTGGCCCAGCGCCTTGGCCTGCT < 2:764640/223‑1 agCAGGCAAAGCATGGTGGCTAGCGCTACCCCGGCAATGCTCAGGAACGTGATACGCCAGCCCAGTGCCTCGCCCACCACACGGCCCAGCGGGATGCCCAGGACCATGGCCAGGGTAGTACCGGTGGCCAGCAGGCCCAGCGCCTTGGCCTGCTGGCC < 2:657335/156‑1 CCGGCAATGCTCAGGAACGTGATACGCCAGCCCAGTGCCTCGCCCACCACACGGCCCAGCGGGATGCCCAGGACCATGGCCAGGGTAGTACCGGTGGCCAGCAGGCCCAGCGCCTTGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGG < 1:373174/168‑1 CCGGCAATGCTCAGGAACGTGATACGCCAGCCCAGTGCCTCGCCCACCACACGGCCCAGCGGGATGCCCAGGACCATGGCCAGGGTAGTACCGGTGGCCAGCAGGCCCAGCGCCTTGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGG > 2:373172/1‑168 GAACGTGATACGCCAGCCCAGTGCCTCGCCCACCACACGGCCCAGCGGGATGCCCAGGACCATGGCCAGGGTAGTACCGGTGGCGAGCAGGCCCAGCGCCTTGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGG < 2:36227/142‑1 CGCTTGAACAGGACCGGCAGGCTGCGCAACGAACCGGAGTTCTGGCTGGGCAGCAGCGGCAGCGATTTGATCAGGCAAAGCATGGTGGCTAGCGCTACCCCGGCAATGCTCAGGAACGTGATACGCCAGCCCAGTGCCTCGCCCACCACACGGCCCAGCGGGATGCCCAGGACCATGGCCAGGGTAGTACCGGTGGCCAGCAGGCCCAGCGCCTTGGCCTGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2776321‑2776095 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgctggccACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGG > AE015451/2776128‑2776167 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |