New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2776095 =	35 (0.800)	3 (0.070)	3/318	NT	9.3%	coding (442/1227 nt)	sotB	Probable sugar efflux transporter
	?	AE015451	2776128 =	26 (0.640)					coding (475/1227 nt)	sotB	Probable sugar efflux transporter

ATCTACGCCTGGATCGTGGCACTGGCCTCGTTGCCCATGATGTTGCTGACCCGCAACATCGAACGGCGGCGTCTGCTGCTGTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCACCATGCTTTGCCTGATCAAATCGCTGCCGCTGCTGCCCAGCCAGAACTCCGGTTCGTTGCGCAGC  >  AE015451/2775864‑2776301                                                                                                                                                                                                                                        |                                                                                                                                                                                                               aTCTACGCCTGGATCGTGGCACTGGCCTCGTTGCCCATGATGTTGCTGACCCGCAACATCGAACGGCGGCGTCTGCTGCTGTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCca                                                                                                                                                                                                            >  1:474782/1‑236 (MQ=255)    tACGCCTGGATCGTGGCACTGGCCTCGTTGCCCATGATGTTGCTGACCCGCAACATCGAACGGCGGCGTCTGCTGCTGTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCca                                                                                                                                                                                                            <  2:681146/233‑1 (MQ=255)           ggATCGTGGCACTGGCCTCGTTGCCCATGATGTTGCTGACCCGCAACATCGAACGGCGGCGTCTGCTGCTGTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAg                                                                                                                                                                                                  >  1:396293/1‑236 (MQ=255)                           cTCGTTGCCCATGATGTTGCTGACCCGCAACATCGAACGGCGGCGTCTGCTGCTGTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCctgctt                                                                                                                                                                                   >  1:365553/1‑234 (MQ=255)                            tCGTTGCCCATGATGTTGCTGACCCGCAACATCGAACGGCGGCGTCTGCTGCTGTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGc                                                                                                                                                                                 <  1:610737/236‑1 (MQ=255)                                             gCTGACCCGCAACATCGAACGGCGGCGTCTGCTGCTGTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTgg                                                                                                                                                                <  1:501657/236‑1 (MQ=255)                                               tGACCCGCAACATCGAACGGCGGCGTCTGCTGCTGTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGc                                                                                                                                                               >  1:38065/1‑235 (MQ=255)                                                    cGCAACATCGAACGGCGGCGTCTGCTGCTGTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGc                                                                                                                                                                                 >  1:183513/1‑212 (MQ=255)                                                           tCGAACGGCGGCGTCTGCTGCTGTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCca                                                                                                                                                                                                            <  2:800094/178‑1 (MQ=255)                                                                      cgTCTGCTGCTGTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTc                                                                                                                                                        >  1:24996/1‑219 (MQ=255)                                                                          tgctgctgTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGc                                                                                                                                                                                 <  1:395914/190‑1 (MQ=255)                                                                           gctgctgTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATc                                                                                                                                               <  1:271469/223‑1 (MQ=255)                                                                                      tgtTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGGTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGc                                                                                                                                                                                 <  1:294157/178‑1 (MQ=255)                                                                                                      tGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTa                                                                                                       >  1:781403/1‑236 (MQ=255)                                                                                                            ccACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTgg                                                                                                                                                                <  2:413233/173‑1 (MQ=255)                                                                                                                                       cTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCGGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTgg                                                                                                                                                                                  <  2:762049/128‑1 (MQ=255)                                                                                                                                          cGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGcc                                                                    <  1:510278/235‑1 (MQ=255)                                                                                                                                              aTGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGc                                                                                                                          >  1:627197/1‑177 (MQ=255)                                                                                                                                                                            cTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGGATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCACCATGCTTTGCCTGATCACATcgctgccg                                      >  1:97705/1‑231 (MQ=255)                                                                                                                                                                                  cATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATc                                                                                                     >  2:282191/1‑162 (MQ=255)                                                                                                                                                                                  cATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATc                                                                                                     <  1:282193/162‑1 (MQ=255)                                                                                                                                                                                       ggTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGc                                                                                                                                                                                                      >  1:633518/1‑60 (MQ=255)                                                                                                                                                                                       ggTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGc                                                                                                                                                                                                      <  2:633516/60‑1 (MQ=255)                                                                                                                                                                                       ggTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCACCATGCTTTGCCTGATCAAATCGCTGCCGCTGCTGCccagcc                         >  2:507315/1‑233 (MQ=255)                                                                                                                                                                                       ggTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGCGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTgtggtg                                                                                                                             >  2:645735/1‑133 (MQ=255)                                                                                                                                                                                            tCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCACCATGCTTTGCCTGATCAAATCGCTGCCgctgct                                 >  2:764510/1‑220 (MQ=255)                                                                                                                                                                                                ccagcgggatgcccaggaccatggccagggtagtaccggtGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCgg                                                                                 <  1:373174‑M1/128‑1 (MQ=255)                                                                                                                                                                                                ccagcgggatgcccaggaccatggccagggtagtaccggtGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCgg                                                                                 >  2:373172‑M1/41‑168 (MQ=255)                                                                                                                                                                                                   cATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCACCATGCTTTGCCTGATc                                                  >  2:647384/1‑196 (MQ=255)                                                                                                                                                                                                       aCCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTgg                                                                                                                                                                <  2:183511/82‑1 (MQ=255)                                                                                                                                                                                                        ccGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGc                                                                     <  1:100776/172‑1 (MQ=255)                                                                                                                                                                                                        ccGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCACCATGCTTTGCCTGATCAAATCGCTGCCGCTGCTGCCCCGCCAGAACTCCGGTTCGTTgcgc     >  1:64792/1‑236 (MQ=255)                                                                                                                                                                                                        ccGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGATGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCCCCATGCTTTGCCTGATCAAATcgc                                           >  1:65255/1‑198 (MQ=255)                                                                                                                                                                                                         cGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCCAGCGCCTTGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTgg                                                                                                                                                    <  2:188824/92‑1 (MQ=37)                                                                                                                                                                                                            ccaggaccatggccagggtagtaccggtGGCCAGCAGGCCAAGGCGCTGGGCCTGCTCGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTc                                                                                               <  2:36227‑M1/114‑1 (MQ=255)                                                                                                                                                                                                             tCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGtactac                                                                                                                                                                     >  2:512827/1‑71 (MQ=255)                                                                                                                                                                                                             tCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGtactac                                                                                                                                                                     <  1:512829/71‑1 (MQ=255)                                                                                                                                                                                                               gCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCACCATGCTTTGCCTGATCAAATcgctgcc                                       <  1:89439/195‑1 (MQ=255)                                                                                                                                                                                                                  ggCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCACCATGCTTTGCCTGATCAAATCGCTGCCGCTGCTGCCCAGCCAGaa                     >  1:102082/1‑210 (MQ=255)                                                                                                                                                                                                                         cGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCACCATGCTTTGCCTGATCAAATCGCTGCCGCTGCTGCCCAGCCAGAACTCCGGTTCGTTGCGCAGc  <  1:453824/222‑1 (MQ=255)                                                                                                                                                                                                                                ggccgccGGGCCAGCAGGCCAAGCCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCACCATGCTTTGCCTGATCAAATcgctgccgctgc                                  <  2:102081/182‑1 (MQ=255)                                                                                                                                                                                                                                        GGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCACCATGCTTTGCctgct                                                   <  2:657335‑M1/158‑3 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                               ATCTACGCCTGGATCGTGGCACTGGCCTCGTTGCCCATGATGTTGCTGACCCGCAACATCGAACGGCGGCGTCTGCTGCTGTTCGTGTTCCTGGTGTTCATTGTCAGCCACTTGCTGTCCTGGCTTTCGCAAAGCTTCGCCATGCTGCTGGTCAGCCGCATCGGCATTGCCCTGGCGCATGCGGTGTTCTGGTCCATCACCGCCTCGCTGGCGGTGCGTGTGGCGCCGCCGGGCCAGCAGGCCAAGGCGCTGGGCCTGCTGGCCACCGGTACTACCCTGGCCATGGTCCTGGGCATCCCGCTGGGCCGTGTGGTGGGCGAGGCACTGGGCTGGCGTATCACGTTCCTGAGCATTGCCGGGGTAGCGCTAGCCACCATGCTTTGCCTGATCAAATCGCTGCCGCTGCTGCCCAGCCAGAACTCCGGTTCGTTGCGCAGC  >  AE015451/2775864‑2776301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.