New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3298762	25 (0.570)	3 (0.070)	3/324	NT	11.2%	coding (979/2319 nt)	pvdQ	Acyl‑homoserine lactone acylase
	?	AE015451	= 3298775	24 (0.580)					coding (992/2319 nt)	pvdQ	Acyl‑homoserine lactone acylase

CATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3298530‑3298762 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatccgtgCCTTTTACCGCGACACGGATGGTTTGCCGGGCCATAGGCAGCGACTTGCCATCGAGCACATAGCGGGTCGGGTCTTTGGGGTCGAGTTGCAGGCGGTAGAGCGTGAAGTGCTTGGAGGTGTCGACGGTGTGCGTCCACGCCAGGTGCTGGTTGAAACCGATGTTGACCACCGGCAGGCCCGGT  <  AE015451/3298775‑3298593                                                                                                                                                                                                                                                                                                                                                                                                                                  CATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTACCGGGCCGGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTG                                                                                                                                                                                         <  1:11324/233‑1                              TTCCCGGCCAGCTTGATGTGAGGGGCGCGGCGCTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTG                                                                                                                                                                                         <  1:204078/204‑1                                                                                                                                                                  TCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCCTCCGTGCCTTTTACCGCGACACGGATGGTTTGCCGGGCCA                                                                                                                                                       >  1:799726/1‑106                                                                                                                                                                                      CGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGCGCCTTTTACCGCGACACGGATGGTTTGCCGGGCCATAGGCAGCGACTTGCCATCGAGCACATAGCGGGTCGGGTCTTTGGGGTCGAGTTGCAGGCGGTAGcg                                                                                    >  1:66272/1‑151                                                                                                                                                                                                     GGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGCCTTTTACCGCGACACGGATGGTTTGCCGGGCCATAGGCAGCGACTTGCCATCGAGCACATAGCGGGTCGGGTCTTTGGGGTCGAGTT                                                                                                 >  1:528359/1‑125                                                                                                                                                                                                                              AAACCATCCGTGCCTTTTACCGCGACACGGATGGTTTGCCGGGCCATAGGCAGCGACTTGCCATCGAGCACATAGCGGGTCGGGTCTTTGGGGTCGAGTTGCAGGCGGTAGAGCGTGAAGTGCTTGGAGGTGTCGACGGTGTGCGTCCACGCCAGGTGCTGGTTGAAACCGATGTTGACCACCGGCAGGCCCGGT  >  2:276108/1‑195                                                                                                                                                                                                                                                                                                                                                                                                                                  CATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3298530‑3298762 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatccgtgCCTTTTACCGCGACACGGATGGTTTGCCGGGCCATAGGCAGCGACTTGCCATCGAGCACATAGCGGGTCGGGTCTTTGGGGTCGAGTTGCAGGCGGTAGAGCGTGAAGTGCTTGGAGGTGTCGACGGTGTGCGTCCACGCCAGGTGCTGGTTGAAACCGATGTTGACCACCGGCAGGCCCGGT  <  AE015451/3298775‑3298593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.