New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3298762	25 (0.570)	3 (0.070)	3/324	NT	11.2%	coding (979/2319 nt)	pvdQ	Acyl‑homoserine lactone acylase
	?	AE015451	= 3298775	24 (0.580)					coding (992/2319 nt)	pvdQ	Acyl‑homoserine lactone acylase

CATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTC  >  AE015451/3298530‑3298977                                                                                                                                                                                                                                         |                                                                                                                                                                                                                        cATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTACCGGGCCGGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTG                                                                                                                                                                                                                         <  1:11324‑M1/233‑1 (MQ=255)             ccAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAgg                                                                                                                                                                                                            <  2:567822/234‑1 (MQ=255)                              ttCCCGGCCAGCTTGATGTGAGGGGCGCGGCGCTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTG                                                                                                                                                                                                                         <  1:204078‑M1/204‑1 (MQ=255)                                     ccAGCTTGATGTGAGGGGCGCGGCGCTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTg                                                                                                                                                                                  <  1:448862/236‑1 (MQ=255)                                                          ggcgcTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTa                                                                                                                                                                     >  1:615264/1‑228 (MQ=255)                                                          ggcgcTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTAcagttcg                                                                                                                                                              >  1:375624/1‑235 (MQ=255)                                                                aCCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGcacggatggttt                                                                                                                                                                                                >  2:276108‑M2/1‑183 (MQ=255)                                                                    ggCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGcc                                                                                                                                                    <  1:702201/235‑1 (MQ=255)                                                                     gCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCg                                                                                                                                                  <  1:283157/236‑1 (MQ=255)                                                                       cTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTAcagttcgcagttcg                                                                                                                                                       <  1:751793/229‑1 (MQ=255)                                                                         gCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTaaaa                                                                                                                                                                                                              >  2:526372/1‑172 (MQ=255)                                                                                                   aGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCCGGTTTAcagttcgcagt                                                                                                                                                          >  2:369663/1‑198 (MQ=255)                                                                                                          ggCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTAcagt                                                                                                                                                                 <  1:298317/184‑1 (MQ=255)                                                                                                                                            ttCACGATCTCCCGCCTGCAACTCGACCCCAAAGCCCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAgg                                                                                                                                                                                                            <  2:117381/107‑1 (MQ=255)                                                                                                                                               ccGCTCTCCCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGcc                                                                                                                                    <  2:267356/175‑1 (MQ=255)                                                                                                                                                  cgctacCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGcgcggatggtttgccgggccataggcagcgacttgccatcgagcacatagcg                                                                                                                                                        >  1:66272‑M2/3‑101 (MQ=255)                                                                                                                                                      aCCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCa                                                                                                            <  1:372381/193‑1 (MQ=255)                                                                                                                                                        cGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGgc                                                                                                                                <  1:268893/171‑1 (MQ=255)                                                                                                                                                         gCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGGTTACAGTTCGCAGTTCGGCCCggtggc                                                                                                                                             >  2:150511/1‑156 (MQ=255)                                                                                                                                                               aaCTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGcacggatggtttgccgggccataggcagcgacttgcc                                                                                                                                                                       >  1:528359‑M2/1‑88 (MQ=255)                                                                                                                                                                  tCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCCTCCGTGccttttaccgcgacacggatggtttgccgggcca                                                                                                                                                                                       >  1:799726‑M1/1‑72 (MQ=255)                                                                                                                                                                     aCCCCAAAGCCCCGACCCGCTCTGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTAcagttcgcagttcg                                                                                                                                                       <  1:31807/135‑1 (MQ=255)                                                                                                                                                                      ccccAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCggtggt                                                                                                                                             <  1:257144/144‑1 (MQ=255)                                                                                                                                                                       cccAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAggc                                                                                                         <  2:375622/179‑1 (MQ=255)                                                                                                                                                                                      cgCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGCGccttttaccgcgacacggatggtttgccgggccataggcagcgacttgccatcgagcacatagcgggtcgggtctttggggtcgagttgcaggcggtagcg                                                                                                                    >  1:66272‑M1/1‑52 (MQ=255)                                                                                                                                                                                               cTCGATGGCAAGTCGCTGCCTAAGGCCCGGCAAGCCCTCCGTGTCGCGGTAAAAGGCTCGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCggtggt                                                                                                                                             <  2:443978/119‑1 (MQ=255)                                                                                                                                                                                                     ggCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGccttttaccgcgacacggatggtttgccgggccataggcagcgacttgccatcgagcacatagcgggtcgggtctttggggtcgagtt                                                                                                                                 >  1:528359‑M1/1‑37 (MQ=255)                                                                                                                                                                                                      gCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTggcggc                  >  1:666068/1‑235 (MQ=255)                                                                                                                                                                                                          gTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAggg                                                                                                                                                                        >  2:69267/1‑80 (MQ=255)                                                                                                                                                                                                             gCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGgtgt                                                             <  2:714082/185‑1 (MQ=255)                                                                                                                                                                                                                gCCTATGTCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGCTGGCAGCCTGAGCCAGATTGCGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCCCCt                                                                                                                           <  2:542076/120‑1 (MQ=255)                                                                                                                                                                                                                     tGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGcacggagggtttgccgggccataggcagcgacttgccatcgagcacatagcgggtcgggtctttggggtcga                                                                                                                                    >  1:799726‑M2/1‑34 (MQ=255)                                                                                                                                                                                                                       gCCCGGCAAACCATCCGTGTCGCGGTAAACGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATgcgc                                                                                                             <  2:218064/127‑1 (MQ=255)                                                                                                                                                                                                                              aaaCCATCCGTGccttttaccgcgacacggatggtttgccgggccataggcagcgacttgccatcgagcacatagcgggtcgggtctttggggtcgagttgcaggcggtagagcgtgaagtgcttggaggtgtcgacggtgtgcgtccacgccaggtgctggttgaaaccgatgttgaccaccggcaggcccggt                                  >  2:276108‑M1/1‑12 (MQ=255)                                                                                                                                                                                                                                 ccATCCGTGTCGCGGTAAGAGGCACGGATGGCAGCCTGAGCCAGATGGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTc  <  1:186912/224‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                        CATGCGCTTCTACCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTC  >  AE015451/3298530‑3298977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.