New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3298762	25 (0.570)	3 (0.070)	3/324	NT	11.2%	coding (979/2319 nt)	pvdQ	Acyl‑homoserine lactone acylase
	?	AE015451	= 3298775	24 (0.580)					coding (992/2319 nt)	pvdQ	Acyl‑homoserine lactone acylase

CCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTC  >  AE015451/3298542‑3298977                                                                                                                                                                                                                                          |                                                                                                                                                                                                           ccAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAgg                                                                                                                                                                                                            <  2:567822/234‑1 (MQ=255)                         ccAGCTTGATGTGAGGGGCGCGGCGCTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTg                                                                                                                                                                                  <  1:448862/236‑1 (MQ=255)                                              ggcgcTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTa                                                                                                                                                                     >  1:615264/1‑228 (MQ=255)                                              ggcgcTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTAcagttcg                                                                                                                                                              >  1:375624/1‑235 (MQ=255)                                                    aCCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGcacggatggttt                                                                                                                                                                                                >  2:276108‑M2/1‑183 (MQ=255)                                                        ggCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGcc                                                                                                                                                    <  1:702201/235‑1 (MQ=255)                                                         gCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCg                                                                                                                                                  <  1:283157/236‑1 (MQ=255)                                                           cTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTAcagttcgcagttcg                                                                                                                                                       <  1:751793/229‑1 (MQ=255)                                                                                       aGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCCGGTTTAcagttcgcagt                                                                                                                                                          >  2:369663/1‑198 (MQ=255)                                                                                              ggCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTAcagt                                                                                                                                                                 <  1:298317/184‑1 (MQ=255)                                                                                                                                ttCACGATCTCCCGCCTGCAACTCGACCCCAAAGCCCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAgg                                                                                                                                                                                                            <  2:117381/107‑1 (MQ=255)                                                                                                                                   ccGCTCTCCCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGcc                                                                                                                                    <  2:267356/175‑1 (MQ=255)                                                                                                                                      cgctacCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGcgcggatggtttgccgggccataggcagcgacttgccatcgagcacatagcg                                                                                                                                                        >  1:66272‑M2/3‑101 (MQ=255)                                                                                                                                          aCCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCa                                                                                                            <  1:372381/193‑1 (MQ=255)                                                                                                                                            cGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGgc                                                                                                                                <  1:268893/171‑1 (MQ=255)                                                                                                                                             gCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGGTTACAGTTCGCAGTTCGGCCCggtggc                                                                                                                                             >  2:150511/1‑156 (MQ=255)                                                                                                                                                   aaCTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGcacggatggtttgccgggccataggcagcgacttgcc                                                                                                                                                                       >  1:528359‑M2/1‑88 (MQ=255)                                                                                                                                                         aCCCCAAAGCCCCGACCCGCTCTGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTAcagttcgcagttcg                                                                                                                                                       <  1:31807/135‑1 (MQ=255)                                                                                                                                                          ccccAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCggtggt                                                                                                                                             <  1:257144/144‑1 (MQ=255)                                                                                                                                                           cccAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAggc                                                                                                         <  2:375622/179‑1 (MQ=255)                                                                                                                                                                                   cTCGATGGCAAGTCGCTGCCTAAGGCCCGGCAAGCCCTCCGTGTCGCGGTAAAAGGCTCGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCggtggt                                                                                                                                             <  2:443978/119‑1 (MQ=255)                                                                                                                                                                                          gCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTggcggc                  >  1:666068/1‑235 (MQ=255)                                                                                                                                                                                              gTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAggg                                                                                                                                                                        >  2:69267/1‑80 (MQ=255)                                                                                                                                                                                                 gCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGgtgt                                                             <  2:714082/185‑1 (MQ=255)                                                                                                                                                                                                    gCCTATGTCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGCTGGCAGCCTGAGCCAGATTGCGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCCCCt                                                                                                                           <  2:542076/120‑1 (MQ=255)                                                                                                                                                                                                         tGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGcacggagggtttgccgggccataggcagcgacttgccatcgagcacatagcgggtcgggtctttggggtcga                                                                                                                                    >  1:799726‑M2/1‑34 (MQ=255)                                                                                                                                                                                                           gCCCGGCAAACCATCCGTGTCGCGGTAAACGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATgcgc                                                                                                             <  2:218064/127‑1 (MQ=255)                                                                                                                                                                                                                     ccATCCGTGTCGCGGTAAGAGGCACGGATGGCAGCCTGAGCCAGATGGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTc  <  1:186912/224‑1 (MQ=255)                                                                                                                                                                                                                                 cgGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTc  >  1:708917/1‑212 (MQ=255)                                                                                                                                                                                                                                 cgGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTc  <  2:708915/212‑1 (MQ=255)                                                                                                                                                                                                                                      aaaGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTgcagc                                                       >  1:511022/1‑154 (MQ=255)                                                                                                                                                                                                                                      aaaGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTgcagc                                                       <  2:511020/154‑1 (MQ=255)                                                                                                                                                                                                                                      aaaGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACACCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAgg          <  2:481271/199‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                           CCAGATGCAACTGACCATTCCCGGCCAGCTTGATGTGATGGGCGCGGCGCTACCGGGCCTGCCGGTGGTCAACATCGGTTTCAACCAGCACCTGGCGTGGACGCACACCGTCGACACCTCCAAGCACTTCACGCTCTACCGCCTGCAACTCGACCCCAAAGACCCGACCCGCTATGTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTC  >  AE015451/3298542‑3298977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.