New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3298848 =	28 (0.640)	3 (0.070)	3/322	NT	10.1%	coding (1065/2319 nt)	pvdQ	Acyl‑homoserine lactone acylase
	?	AE015451	3298880 =	27 (0.660)					coding (1097/2319 nt)	pvdQ	Acyl‑homoserine lactone acylase

ACGGCCAGCGTGTTGACCCAAGGGATACCTTGCAACTGCTCGACCGATCCCTTCAATGCCGCCAGGCTGTCGGCTCGGTTGATCTGGTACCACTGCTGCAACACCCGTGAGTTCTCGAGGTTGGCGTCTCGCACGCTGTAGGCCGCCTGCGCATCCCAGTCCAGGCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3299018‑3298848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcggcctACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGTAGTGCCCTATGTCGACCAGCAACTGTTGGATACCTGCAGCAACCCGCAG  >  AE015451/3298880‑3299106                                                                                                                                                                                                                                                                                                                                                                                                                cCGGCCAGCGTGTTGACCCAAGGGATACCTTGCAACTGCTCGACCGATCCCTTCAATGCCGCCAGGCTGTCGGCTCGGTTGATCTGGTACCACTGCTGCAACACCCGTGAGTTCTCGAGGTTGGCGTCTCGCACGCTGTAGGCCGCCTGCGCATCCCAGTCCAGGCG                                                                                                                                                                                                                                         <  2:89244/166‑1         CGTGTTGACCCAAGGGATCCCTTGCAACTGCTCGACCGATCCCTTCAATGCCGCCAGGCTGTCGGCTCGGTTGATCTGGTGCCACTGCTGCAACACCCGTGAGTTCTCGAGGTTGGCGTCTCGCACGCTGTAGGCCGCCTGCGCATCCCAGTCCAGGCGGCCTACAGCGTGCGAGACGCCAACCT                                                                                                                                                                                                               <  1:146507/185‑1                     AGGGATACCTTGCAACTGCTCGACCGATCCCTTCAATGCCGCCAGGCTGTCGGCTCGGTTGATCTGGTACCACTGCTGCAACACCCGTGAGTTCTCGAGGTTGGCGTCTCGCACGCTGTAGGCCGCCTGCGCATCCCAGTCCAGG                                                                                                                                                                                                                                           >  1:11649/1‑145                                          GACCGATCCCTTCAATGCCGCCAGGCTGTCGGCTCGGTTGATCTGGTACCACTGCTGCAACACCCGTGAGTTCTCGAGGTTGGCGTCTCGCACGCTGTAGGCCGCCTGCGCATCCCAGTCCAGGCGG                                                                                                                                                                                                                                        <  1:336440/127‑1                                          GACCGATCCCTTCAATGCCGCCAGGCTGTCGGCTCGGTTGATCTGGTACCACTGCTGCAACACCCGTGAGTTCTCGAGGTTGGCGTCTCGCACGCTGTAGGCCGCCTGCGCATCCCAGTCCAGGCGG                                                                                                                                                                                                                                        >  2:336438/1‑127                                                                                                                              GTCTCGCCCGCTGTAGGCCGCCTGCGCATCCCAGTCCAGGCGGCCTACAGCGTGCGAGACTCCAACCTCGAGAACTCACGGGTGTTG                                                                                                                                                                                            <  2:126049/87‑1                                                                                                                              GTCTCGCACGCTGTAGGCCGCCTGCGCATCCCAGTCCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTT                                                                                                                                                                                             <  1:668409/86‑1                                                                                                                                                                   AGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGTAGTGCCCTATGTCGACCAGCAACTGTTGGATACCTGCAGCAACCCGCAG  >  1:366629/1‑236                                                                                                                                                                   AGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGTAGTGCCCTATGTCGACCAGCAACTGTTGGATACCTGCAGCAACCCGCAG  >  1:415234/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                ACGGCCAGCGTGTTGACCCAAGGGATACCTTGCAACTGCTCGACCGATCCCTTCAATGCCGCCAGGCTGTCGGCTCGGTTGATCTGGTACCACTGCTGCAACACCCGTGAGTTCTCGAGGTTGGCGTCTCGCACGCTGTAGGCCGCCTGCGCATCCCAGTCCAGGCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3299018‑3298848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcggcctACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGTAGTGCCCTATGTCGACCAGCAACTGTTGGATACCTGCAGCAACCCGCAG  >  AE015451/3298880‑3299106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.