New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3298848 =	28 (0.640)	3 (0.070)	3/322	NT	10.1%	coding (1065/2319 nt)	pvdQ	Acyl‑homoserine lactone acylase
	?	AE015451	3298880 =	27 (0.660)					coding (1097/2319 nt)	pvdQ	Acyl‑homoserine lactone acylase

GTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGTAGTGCCCTATGTCGACCAGCAACTGTTGGATACCTGCAGCAACCCGCAG  >  AE015451/3298717‑3299106                                                                                                                                                                    |                                                                                                                                                                                                                                   cgtgttgacccaagggatcccttgcaactgctcgaccgatcccttcaatgccgccaggctgtcggctcggttgatctggtgccactgctgcaacacccgtgagttctcgaggttggcgtctcgcacgctgtaggccgcctgcgcatcccagtccaggcggcctACAGCGTGCGAGACGCCAACCt                                                                                                                                                                                                               <  1:146507‑M2/22‑1 (MQ=255)           gCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTggcggc                                                                                                                                                   >  1:666068/1‑235 (MQ=255)                  gCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGgtgt                                                                                                                                                                                              <  2:714082/185‑1 (MQ=255)                                      ccATCCGTGTCGCGGTAAGAGGCACGGATGGCAGCCTGAGCCAGATGGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTc                                                                                                                                   <  1:186912/224‑1 (MQ=255)                                                  cgGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTc                                                                                                                                   >  1:708917/1‑212 (MQ=255)                                                  cgGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTc                                                                                                                                   <  2:708915/212‑1 (MQ=255)                                                       aaaGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTgcagc                                                                                                                                                                                        <  2:511020/154‑1 (MQ=255)                                                       aaaGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTgcagc                                                                                                                                                                                        >  1:511022/1‑154 (MQ=255)                                                       aaaGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACACCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAgg                                                                                                                                           <  2:481271/199‑1 (MQ=255)                                                                gagggCAGCCTGAGCCAGATTGAGCGGCAGGTTTCCAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGc                                                                                             <  1:183229/233‑1 (MQ=255)                                                                    gCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTg                                                                                         >  1:600049/1‑236 (MQ=255)                                                                                      aGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGACCGCCTGGACTGGGATTCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTgcag                                                                                                                                                                                         <  2:77810/122‑1 (MQ=255)                                                                                           caacacccgtgagttctcgaggttggagtctcgcacgctgtAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGGGCGAGAc                                                                                                                                                                                                                       <  2:126049‑M1/46‑1 (MQ=255)                                                                                            aacacccgtgagttctcgaggttggcgtctcgcacgctgtAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGAc                                                                                                                                                                                                                       <  1:668409‑M1/46‑1 (MQ=255)                                                                                                   cagttcgcagttcgGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGGTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCg                                                                                                                                  >  1:316862/1‑164 (MQ=255)                                                                                                    agttcgcagttcgGCCCGGTGGTGCAATTGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTg                                                                                               <  1:23882/198‑1 (MQ=255)                                                                                                         gcagttcgGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCg                                                     <  1:369665/235‑1 (MQ=255)                                                                                                           agttcgGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCg                                                     >  2:415089/1‑233 (MQ=255)                                                                                                           agttcgGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGtc                                                  >  1:108797/1‑235 (MQ=255)                                                                                                           agttcgGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGAACGGGCGAg                                                                                                                                >  2:73940/1‑158 (MQ=255)                                                                                                             ttcgGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCg                                                     <  2:600047/231‑1 (MQ=255)                                                                                                              aggttggcgtctcgcacgctgtAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGCACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGGATCCCTTGGGTCAACACg                                                                                                  <  1:146507‑M1/163‑1 (MQ=255)                                                                                                                ggCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTggcg                                                                                                                                                     >  2:717939/1‑132 (MQ=255)                                                                                                                   ccGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGTAGTGCCCTa                                          >  1:631139/1‑236 (MQ=255)                                                                                                                     ggtggtGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAgggcggg                                                                         <  1:695251/203‑1 (MQ=255)                                                                                                                     ggtggtGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAgggcggg                                                                         >  2:695249/1‑203 (MQ=255)                                                                                                                      gtctcgcccgctgtaggccgcctgcgcatcccagtccaggcggcctACAGCGTGCGAGACTCCAACCTCGAGAACTCACGGGTGTTg                                                                                                                                                                                            <  2:126049‑M2/41‑1 (MQ=255)                                                                                                                      gtctcgcacgctgtaggccgcctgcgcatcccagtccaggcggcctACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGtt                                                                                                                                                                                             <  1:668409‑M2/40‑1 (MQ=255)                                                                                                                              aTGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGTAGTGCCCTATGTCGACCAGc                               <  1:526374/236‑1 (MQ=255)                                                                                                                                   cAGGCCGCCTGGCCTGGGAGGCGCCGGCGGCCTACAGCGTGCGAGACGCCAACCGCGAGAACCCACGGGTGTTGCAGCAGTGGTACCAGGTCAACCGAGCCGACAGCCTGGCGGCATTGCAGGGATCGGTCGAg                                                                                                                                <  2:287732/134‑1 (MQ=255)                                                                                                                                       CCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTc                                                                                                                                   >  2:336438‑M1/1‑127 (MQ=255)                                                                                                                                       CCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTc                                                                                                                                   <  1:336440‑M1/127‑1 (MQ=255)                                                                                                                                        CGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCcgg                                                                                          <  2:89244‑M1/167‑2 (MQ=255)                                                                                                                                          CCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCt                                                                                                              >  1:11649‑M1/1‑145 (MQ=255)                                                                                                                                              gACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGTCTTGTACCTGAACCAGTCGGTAGTGCCCTATGTCGACCAGCAACTGTTGGATa                   >  2:276303/1‑232 (MQ=255)                                                                                                                                              gACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGTAGTGCCCTATGTCGACCAGCAACTGTTGGATACCTg               >  1:755973/1‑236 (MQ=255)                                                                                                                                                cTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGTAGTGCCCTATGTCGACCAGCAACCGTTGGATACCTgc              >  1:406429/1‑235 (MQ=255)                                                                                                                                                    gctGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTg                                                                                               <  2:467394/148‑1 (MQ=255)                                                                                                                                                           aggcggcctACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGTAGTGCCCTATGTCGACCAGCAACTGTTGGATACCTGCAGCAACCCGCAg  >  1:415234‑M2/10‑236 (MQ=255)                                                                                                                                                           aggcggcctACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGTAGTGCCCTATGTCGACCAGCAACTGTTGGATACCTGCAGCAACCCGCAg  >  1:366629‑M2/10‑236 (MQ=255)                                                                                                                                                                    |                                                                                                                                                                                                                                   GTGCTCGATGGCAAGTCGCTGCCTATGGCCCGGCAAACCATCCGTGTCGCGGTAAAAGGCACGGATGGCAGCCTGAGCCAGATTGAGCGGCAGGTTTACAGTTCGCAGTTCGGCCCGGTGGTGCAATGGCCAGGCCGCCTGGACTGGGATGCGCAGGCGGCCTACAGCGTGCGAGACGCCAACCTCGAGAACTCACGGGTGTTGCAGCAGTGGTACCAGATCAACCGAGCCGACAGCCTGGCGGCATTGAAGGGATCGGTCGAGCAGTTGCAAGGTATCCCTTGGGTCAACACGCTGGCCGTGGATCAGGGAGGGCGGGCCTTGTACCTGAACCAGTCGGTAGTGCCCTATGTCGACCAGCAACTGTTGGATACCTGCAGCAACCCGCAG  >  AE015451/3298717‑3299106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.