New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3550927	29 (0.660)	5 (0.120)	5/324	NT	14.8%	coding (79/957 nt)	PP_3135	putative Glycosyl transferase
	?	AE015451	= 3550994	30 (0.730)					coding (146/957 nt)	PP_3135	putative Glycosyl transferase

GAGTTCATTTGTACCACCGAACAGTTGATCAAGCGGGTCGAGGCACGTTGCGAAGCCTACCCATGGATCGATCTGGTGAAGCAGCGCAACGGTGCCTACGACCCGGAAGTGGAACCGTTACTGATGGCGCAAAGACGTCAGTATTTCTTCGGGGACAGCTGAAATGGCTAGCAAACCTGTGGATGTCATGGTGGTCAACTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3550686‑3550927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcgctgcACCGAGTCATCGCGCGAGGCATTGTCGACCACCAGGTAACTGGCCAGCCGCTCGCTGTCGGCCCGGCGCAGCGCATCGAACATCGGCTGCAACAGTCCAGCGGTATTGAAGTTGACCACCATGACATCCACAGGTTTGCTAGCCATTTCAGCTGTCCCCGAAGAAATACTGACGTCTTTGCGCCATCAGTAACGGTTCCACTTCCGGGTCGTAGGCACCGTTGCGCTGC  <  AE015451/3550994‑3550766                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAGTTCATTTGTACCACCGAACAGTTGATCAAGCGGGTCGAGGCACGTTGCGAAGCCTACCCATGGATCGATCTGGTGAAGCAGCGCAACGGTGCCTACGACCCGGAAGTGGAACCGTTACTGATGGCGCAAAGACGTCAGTATTTCTTCGGGGACAGCTGAAATGGCTAGCAAACCTGTGGATGTCATGGTGGTCAACTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGAT                                                                                                                                                                                                                                              >  1:453860/1‑235   GTTCATTTGTACCACCGAACAGTTGATCAAGCGGGTCGAGGCACGTTGCGAAGCCTACCCATGGATCGATCTGGTGAAGCAGCGCAACGGTGCCTACGACCCGGAAGTGGAACCGTTACTGATGGCGCAAAGACGTCAGTATTTCTTCGGGGACAGCTGAAATGGCTAGCAAACCTGTGGATGTCATGGTGGTCAACTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGAT                                                                                                                                                                                                                                              >  2:680194/1‑233                                                              CATGGATCGATCTGGTGAAGCAGCGCAACGGTGCCTACGACCCGGAAGTGGAACCGTTACTGATGGCGCAAAGACGTCAGTATTTCTTCGGGGACAGCTGAAATGGCTAGCAAACCTGTGGATGTCATGGTGGTCAACTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGC                                                                                                                                                                                                                                       >  1:717507/1‑181                                                                                                                                                                                          TCATGGTGGGCAACTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGCACCGAGTCATCGCGCGAGGCATTGTCGACCACCAGGTAACTGGCCAGCCGCTCGC                                                                                                                                                                                <  2:483946/112‑1                                                                                                                                                                                              GGTGGTCAACTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGCACCGAGTCATCGCGCGAGGCATTGTCGACCACCAGGTAACTGGCCAGCCGCTCGCTGTCGGCCCGGCGCAGCGCATCGAACATCGGCTGCAACAGTCCAGCGGTATTGAAGTTGACCACCATGACATCCACAGGTTTGCTAGCCATTTCAGCTGTCCCCGAAGAAATACTGACGTCTTTGCGC                                                >  1:583928/1‑236                                                                                                                                                                                                               CCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGCACCGAGTCATCGCGCGAGGCATTGTCGACCACCAGGTAACTGGCCAGCCGCTCGCTGTCG                                                                                                                                                                           >  1:109624/1‑96                                                                                                                                                                                                               CCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGCACCGAGTCATCGCGCGAGGCATTGTCGACCACCAGGTAACTGGCCAGCCGCTCGCTGTCG                                                                                                                                                                           <  2:109623/96‑1                                                                                                                                                                                                                     GACTGTTGCAGCCGATGTTCGATGCGCTGCACCGAGTCATCGCGCGAGGCATTGTCGACCACCAGGTAACTGGCCAGCCGCTCGCTGTCGGCCCGGCGCAGCG                                                                                                                                                              >  2:449632/1‑103                                                                                                                                                                                                                                              GCTGCACCGAGTCATCGCGCGAGGCATTGTCGACCACCAGGTAACTGGCCAGCCGCTCGCTGTCGGCCCGGCGCAGCGCATCGAACATCGGCTGCAACAGTCCAGCGGTATTGAAGTTGACCACCATGACATCCACAGGTTTGCTAGCCATTTCAGCTGTCCCCGAAGAAATACTGACGTCTTTGCGCCATCAGTAACGGTTCCACTTCCGGGTCGTAGGCACCGTTGCGCTGC  >  2:748875/1‑234                                                                                                                                                                                                                                              GCTGCACCGAGTCATCGCGCGAGGCATTGTCGACCACCAGGTAACTGGCCAGCCGCTCGCTGTCGGCCCGGCGCAGCGCATCGAACATCGGCTGCAACAGTCCAGCGGTATTGAAGTTGACCACCATGACATCCACAGGTTTGCTAGCCATTTC                                                                                  <  1:225915/154‑1                                                                                                                                                                                                                                              GCTGCACCGAGTCATCGCGCGAGGCATTGTCGACCACCAGGTAACTGGCCAGCCGCTCGCTGTCGGCCCGGCGCAGCGCATCGAACATCGGCTGCAACAGTCCAGCGGTATTGAAGTTGACCACCATGACATCCACAGGTTTGCTAGCCATTTC                                                                                  >  2:225913/1‑154                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAGTTCATTTGTACCACCGAACAGTTGATCAAGCGGGTCGAGGCACGTTGCGAAGCCTACCCATGGATCGATCTGGTGAAGCAGCGCAACGGTGCCTACGACCCGGAAGTGGAACCGTTACTGATGGCGCAAAGACGTCAGTATTTCTTCGGGGACAGCTGAAATGGCTAGCAAACCTGTGGATGTCATGGTGGTCAACTTCAATACCGCTGGACTGTTGCAGCCGATGTTCGATGCGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3550686‑3550927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcgctgcACCGAGTCATCGCGCGAGGCATTGTCGACCACCAGGTAACTGGCCAGCCGCTCGCTGTCGGCCCGGCGCAGCGCATCGAACATCGGCTGCAACAGTCCAGCGGTATTGAAGTTGACCACCATGACATCCACAGGTTTGCTAGCCATTTCAGCTGTCCCCGAAGAAATACTGACGTCTTTGCGCCATCAGTAACGGTTCCACTTCCGGGTCGTAGGCACCGTTGCGCTGC  <  AE015451/3550994‑3550766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.