New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4089728 =	37 (0.850)	3 (0.070)	3/326	NT	7.7%	coding (795/912 nt)	kdgD	5‑dehydro‑4‑deoxyglucarate dehydratase
	?	AE015451	4089763 =	37 (0.890)					coding (830/912 nt)	kdgD	5‑dehydro‑4‑deoxyglucarate dehydratase

TCTTAGTCGCTTGCATGCTGGCAATACTCCCACTAGTTATTTTTGTGCGGGCTCACGAATTGTAGCCGGAGTGGGGTAGGCCCACTCCGGGCGCGGCGTCTGGCAGGCCGCGGGCAGCGTTTACTGCGGGCCCATCTTGTCCATCAGCGCGGCGAGCATTTCGTACTCTTCGGCGGTGAGGTCGGTCAGCGGGGTACGCACCGGGCCGGCGTCGTAACCGGCAATTCTGGCGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4089965‑4089728 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccggccCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCT  >  AE015451/4089763‑4089980                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCTTAGTCGCTTGCATGCTGGCAATACTCCCACTAGTTATTTTTGTGCGGGCTCACGAATTGTAGCCGGAGTGGGGTAGGCCCACTCCGGGCGCGGCGTCTGGCAGGCCGCGGGCAGCGTTTACTGCGGGCCCATCTTGTCCATCAGCGCGGCGAGCATTTCGTACTCTTCGGCGGTGAGGTCGGTCAGCGGGGTACGCACCGGGCCGGCGTCGTAACCGGCAATTCTGGCGCCG                                                                                                                                                                                                                               >  1:741417/1‑235                                                                                                                                                                                            AGCGGGGTACGCACCGGGCCGTCGGCGTAACCGTCAATTCTGGCGCCGGCCCGGTGCGTACCCCCCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCG                                                                                                                                                                    <  2:631102/107‑1                                                                                                                                                                                                    ACGCTCCGGGCCGGCGTCGTAACCGGCAATTCTGGCGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCG                                                                                                                                                                                           <  2:615171/76‑1                                                                                                                                                                                                                  CGTCGTAACCGGCAATTCTGGCGCCGGCCCGGTGCGTACCCCGCTGACCGCCCTCACCGC                                                                                                                                                                                             <  1:711172/60‑1                                                                                                                                                                                                                                      cCGCCGGCCCGGTGCGTACCCCGCTGACCGACCCCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCT  <  1:136265/226‑1                                                                                                                                                                                                                                       CGCCGGCCCGGTGCGTCCCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCG                                                                                                        <  1:76779/124‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCTTAGTCGCTTGCATGCTGGCAATACTCCCACTAGTTATTTTTGTGCGGGCTCACGAATTGTAGCCGGAGTGGGGTAGGCCCACTCCGGGCGCGGCGTCTGGCAGGCCGCGGGCAGCGTTTACTGCGGGCCCATCTTGTCCATCAGCGCGGCGAGCATTTCGTACTCTTCGGCGGTGAGGTCGGTCAGCGGGGTACGCACCGGGCCGGCGTCGTAACCGGCAATTCTGGCGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4089965‑4089728 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccggccCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCT  >  AE015451/4089763‑4089980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.