New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4089728 =	37 (0.850)	3 (0.070)	3/326	NT	7.7%	coding (795/912 nt)	kdgD	5‑dehydro‑4‑deoxyglucarate dehydratase
	?	AE015451	4089763 =	37 (0.890)					coding (830/912 nt)	kdgD	5‑dehydro‑4‑deoxyglucarate dehydratase

CTACAAGGCCCTGGGCGTACCGGTGTACTCCTCCGCTGTGTTCAACTTCGTGCCGAAAACCGCCATGGACTTCTACAACGCCATCGCCCGTGACGACCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCT  >  AE015451/4089539‑4089980                                                                                                                                                                                                                                 |                                                                                                                                                                                                                          cTACAAGGCCCTGGGCGTACCGGTGTACTCCTCCGCTGTGTTCAACTTCGTGCCGAAAACCGCCATGGACTTCTACAACGCCATCGCCCGTGACGACCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTAcc                                                                                                                                                                                                                 <  1:459940/235‑1 (MQ=255)              ggCGTACCGGTGTACTCCTCCGCTGTGTTCAACTTCGTGCCGAAAACCGCCATGGACTTCTACAACGCCATCGCCCGTGACGACCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTgaccgacc                                                                                                                                                                                                    <  1:295466/235‑1 (MQ=255)               gCGTACCGGTGTACTCCTCCGCTGTGTTCAACTTCGTGCCGAAAACCGCCATGGACTTCTACAACGCCATCGCCCGTGACGACCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCt                                                                                                                                                                                                   >  1:464302/1‑235 (MQ=255)                     cGGTGTACTCCTCCGCTGTGTTCAACTTCGTGCCGAAAACCGCCATGGACTTCTACAACGCCATCGCCCGTGACGACCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCAccg                                                                                                                                                                                              >  2:550631/1‑234 (MQ=255)                                                 cGTGCCGAAAACCGCCATGGACTTCTACAACGCCATCGCCCGTGACGACCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTg                                                                                                                                                                                                           >  1:256694/1‑193 (MQ=255)                                                    gCCGAAAACCGCCATGGACTTCTACAACGCCATCGCCCGTGACGACCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGAt                                                                                                                                                               >  2:501563/1‑234 (MQ=255)                                                       cgaaaCCGCCATGGACTTCTACAACGCCATCGCCCGTGACGACCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACa                                                                                                                                                          >  1:670704/3‑236 (MQ=255)                                                          ccccGCCATGGACTGCTACAACGCCATCGCCCGTGACGCCCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTa                                                                                                                                                                                                                   <  2:120631/174‑1 (MQ=255)                                                                          tACAACGCCATCGCCCGTGACGACCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCcgcg                                                                                                                                                                    >  2:574669/1‑207 (MQ=255)                                                                                   aTCGCCCGTGACGACCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCcgc                                                                                                                              <  1:698968/236‑1 (MQ=255)                                                                                       cccGTGACGACCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACg                                                                                                                                      >  2:698966/1‑224 (MQ=255)                                                                                               gcccACGCCACCGTGGCCAAGCTGCTCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGc                                                                                                                                                                            <  1:248659/176‑1 (MQ=255)                                                                                                     gCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCcgcg                                                                                                            >  1:595350/1‑236 (MQ=255)                                                                                                              gCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTg                                                                                                   <  1:699325/236‑1 (MQ=255)                                                                                                               ccAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGAc                                                                                                                                                           >  2:727707/1‑179 (MQ=255)                                                                                                                         cgacgaTTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTAc                                                                                            <  2:766927/232‑1 (MQ=255)                                                                                                                         cgacgaTTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCa                                                                                        <  1:398859/236‑1 (MQ=255)                                                                                                                                      cgcggcgagcatttcgtactcttcggcggtgaggtcggtcaggggggtacgcaccgGGCCGGCGCCAGAATTGACGGTTACGCCGACGGCCCGGTGCGTACCCCGCt                                                                                                                                                                                                            <  2:631102‑M1/51‑1 (MQ=255)                                                                                                                                            tACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGAcgc                                                                                                                >  2:369809/1‑193 (MQ=255)                                                                                                                                            tACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTg                                                                      >  1:724241/1‑235 (MQ=255)                                                                                                                                                tGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGc                                                                                                                                              >  1:299272/1‑159 (MQ=255)                                                                                                                                                   aCATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGccc                                                                 <  2:670702/233‑1 (MQ=255)                                                                                                                                                       ccgcaaccgcaaGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGa                                                                     <  1:61186/225‑1 (MQ=255)                                                                                                                                                        cgcaaccgcaaGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCg                                                                                                        >  1:93937/1‑189 (MQ=255)                                                                                                                                                           aaccgcaaGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTcgcc                                                                                                                                                                       <  2:22514/123‑1 (MQ=255)                                                                                                                                                           aaccgcaaGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTcgcc                                                                                                                                                                       >  1:22514/1‑123 (MQ=255)                                                                                                                                                           aaccgcaaGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCgg                                                                                                       >  2:312685/1‑187 (MQ=255)                                                                                                                                                             cggcggtgaggtcggtcagcggggtacgcaccgGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGAGCGt                                                                                                                                                                                                                    <  2:615171‑M1/43‑1 (MQ=255)                                                                                                                                                               gcaaGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTcc                                                                                    <  2:318777/202‑1 (MQ=255)                                                                                                                                                                   ggCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGACGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGCCCGCACACAAATAACTAGTgg                                              >  1:268862/1‑236 (MQ=255)                                                                                                                                                                              agcggggtacgcaccgggccgtcggcgtaaccgtcaattctggcgccggccCGGTGCGTACCCCCCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCcgcg                                                                                                                                                                    <  2:631102‑M2/56‑1 (MQ=255)                                                                                                                                                                                     cATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGAcgccgc                                                                                                             <  2:663612/155‑1 (MQ=255)                                                                                                                                                                                      acgctccgggccggcgtcgtaaccggcaattctggcgccggccCGGTGCGTACCCCGCTGACCGACCTCAccgccg                                                                                                                                                                                           <  2:615171‑M2/33‑1 (MQ=255)                                                                                                                                                                                           cAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGccc                                                                 <  1:172120/193‑1 (MQ=255)                                                                                                                                                                                                 CGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGa                 >  1:741417‑M1/1‑235 (MQ=255)                                                                                                                                                                                                    cgtcgtaaccggcaattctggcgccggccCGGTGCGTACCCCGCTGACCGCCCTCAccgc                                                                                                                                                                                             <  1:711172‑M2/31‑1 (MQ=255)                                                                                                                                                                                                      ccAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTaa                                                                                                                                         <  2:493693/110‑1 (MQ=255)                                                                                                                                                                                                      ccAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTaa                                                                                                                                         >  1:493695/1‑110 (MQ=255)                                                                                                                                                                                                       cAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCCGTAAACACTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCCCTCCgg                                                                                  >  2:28965/1‑164 (MQ=255)                                                                                                                                                                                                       cAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGc                                     >  1:564610/1‑209 (MQ=255)                                                                                                                                                                                                        aGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTg                                                                      <  2:410451/175‑1 (MQ=255)                                                                                                                                                                                                         gAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCAt         <  1:550633/235‑1 (MQ=255)                                                                                                                                                                                                           aTTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCAtgt       <  1:501565/235‑1 (MQ=255)                                                                                                                                                                                                                        ccgccggccCGGTGCGTACCCCGCTGACCGACCCCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCt  <  1:136265‑M2/218‑1 (MQ=255)                                                                                                                                                                                                                         cgccggccCGGTGCGTCCCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCg                                                                                                        <  1:76779‑M2/116‑1 (MQ=255)                                                                                                                                                                                                                                 |                                                                                                                                                                                                                          CTACAAGGCCCTGGGCGTACCGGTGTACTCCTCCGCTGTGTTCAACTTCGTGCCGAAAACCGCCATGGACTTCTACAACGCCATCGCCCGTGACGACCACGCCACCGTGGCCAAGCTGATCGACGATTTCTTCCTGCCCTACCTGGACATCCGCAACCGCAAGGCCGGCTACGCCGTGAGCATCGTCAAGGCCGGCGCCAGAATTGCCGGTTACGACGCCGGCCCGGTGCGTACCCCGCTGACCGACCTCACCGCCGAAGAGTACGAAATGCTCGCCGCGCTGATGGACAAGATGGGCCCGCAGTAAACGCTGCCCGCGGCCTGCCAGACGCCGCGCCCGGAGTGGGCCTACCCCACTCCGGCTACAATTCGTGAGCCCGCACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCT  >  AE015451/4089539‑4089980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.