New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 410961825 (0.570)3 (0.070) 3/326 NT 11.2% coding (1440/2991 nt) PP_3616 conserved membrane protein of unknown function
?AE015451 = 4109662 NA (NA)coding (1484/2991 nt) PP_3616 conserved membrane protein of unknown function

ACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4109407‑4109618
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgccgAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTCCAGGCGTTTGAAACGCCGGTCATGATCTTCTGTGCCGGGTGTCGGCTGGCCCATTGGGTGAATCAGCAACGCCAGTGAGATTTCCAGACCGCGGGCGGAGGTGCGTTCGTCGCGGTCGTAACAGGCCAGTGCCGCAG  <  AE015451/4109662‑4109431
                                                                                                                                                                                                                                                                                                                                                                                                                                                            
ACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTT                                                                                                                                                                                                                                                 <  2:299772/205‑1
                  GCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTT                                                                                                                                                                                                                                                 <  2:716310/187‑1
                                                                                                       CCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGG                                                                                                                                                                                                                                               >  2:194251/1‑104
                                                                                                                       ACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCGCTACAACGCCTTGGCGCCGACCAAGG                                                                                                                                                                                                                                   >  1:490635/1‑100
                                                                                                                                                 GCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGAACAAGGTGCCGATCGAATCG                                                                                                                                                                                                                     >  1:467093/1‑88
                                                                                                                                                 GCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGAACAAGGTGCCGATCGAATCG                                                                                                                                                                                                                     <  2:467091/88‑1
                                                                                                                                                                                                                GCCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTCCAGGCGTTTGAAACGCCGGTCATGATCTTCTGTGCCGGGTGTCGGCTGGCCCATTGGGTGAATCAGCAACGCCAGTGAGATTTCCAGACCGCGGGCGGAGGTGCGTTCGTCGCGGTCGTAACAGGCCAGTGCCGCAG  <  1:277405/236‑1
                                                                                                                                                                                                                 CCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTCCAGGCGTTTGAAACGCCGGTCATGATCTTCTGTGCCGGGTGTCGGCTGGCCCATTGGGTGAATCAGCAACGCCAGTGAGATTTCCAGACCGCGGGCGGAGGTGCGTTCGTCGCGGTCGTAACAGGCCAGTGCCGCAG  <  1:709663/235‑1
                                                                                                                                                                                                                 CCGAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTGGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTCCAGGCGTTTGAAACGCCGGTCATGATCTTCTGTGCCGGGTGTCGGCTGGCCCATTGGGTGAATCAGCAACGCCAGTGAGATTTCCAGACCGCGGGCGGAGGTGCGTTCGTCGCGGTCGTAACAGGCCAGTGCCGCAG  <  1:112094/235‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                            
ACATTGATAACCCCTACAGCCTGGCTGCGGCACTGGCCTGTTACGACCGCGACGAACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4109407‑4109618
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgccgAACAAGGTGCCGATCGAATCGGCTTTGTCCTTGAACGGGTTGAACGGCGCCAAGGCGGTGTAAAGCGGGCTGTCGTGCTGGTCCAGCCATTGCTCCAGGCGTTTGAAACGCCGGTCATGATCTTCTGTGCCGGGTGTCGGCTGGCCCATTGGGTGAATCAGCAACGCCAGTGAGATTTCCAGACCGCGGGCGGAGGTGCGTTCGTCGCGGTCGTAACAGGCCAGTGCCGCAG  <  AE015451/4109662‑4109431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.