New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4109618	25 (0.570)	3 (0.070)	3/326	NT	11.2%	coding (1440/2991 nt)	PP_3616	conserved membrane protein of unknown function
	?	AE015451	= 4109662	NA (NA)					coding (1484/2991 nt)	PP_3616	conserved membrane protein of unknown function

GAACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGC  >  AE015451/4109460‑4109896                                                                                                                                                                                                           |                                                                                                                                                                                                                                           gaACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGc                                                                                                                                                                                                           >  1:43289/1‑236 (MQ=31) gaACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGc                                                                                                                                                                                                           >  1:372241/1‑236 (MQ=31)               ccgcGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCgg                                                                                                                                                                                             >  1:347063/1‑236 (MQ=31)                   ggTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGGCAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCa                                                                                                                                                                                          <  1:381607/235‑1 (MQ=14)                   ggTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCa                                                                                                                                                                                          <  1:773080/235‑1 (MQ=31)                    gTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTc                                                                                                                                                                                                 >  1:723781/1‑227 (MQ=31)                                  cTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCAcc                                                                                                                                                                            >  1:668666/1‑234 (MQ=32)                                  cTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCCGCGCCAGCGACCACGTGATCGAAGGGCTGGCCGGTCGCtc                                                                                                                                                                                                  >  1:203751/1‑211 (MQ=14)                                   tGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGa                                                                                                                                                                          <  1:154813/235‑1 (MQ=32)                                            tGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCAcc                                                                                                                                                                   <  2:688919/233‑1 (MQ=33)                                             gATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCg                                                                                                                                                                  >  2:353234/1‑233 (MQ=32)                                              aTTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCa                                                                                                                                                              <  1:217250/236‑1 (MQ=32)                                                          ggCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATg                                                                                                                                                   <  1:466414/235‑1 (MQ=33)                                                                                   aTCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCgg                                                                                                                          <  1:395267/235‑1 (MQ=35)                                                                                        gACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGcc                                                                                                                                                 >  1:292611/1‑207 (MQ=35)                                                                                                tttCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTg                                                                                                                               >  1:386445/1‑217 (MQ=37)                                                                                                 ttCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGt                                                                                                                                                                                                       <  2:85567/144‑1 (MQ=32)                                                                                                 ttCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGt                                                                                                                                                                                                       >  1:85568/1‑144 (MQ=32)                                                                                                 ttCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGa                                                                                                           <  1:353236/236‑1 (MQ=37)                                                                                                             gAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCa                                                                                                                                                                     <  2:400403/166‑1 (MQ=35)                                                                                                                                  gACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCgg                                                                                                                          <  2:43289/188‑1 (MQ=37)                                                                                                                                       cccGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATggg                                                                                                            >  2:749659/1‑197 (MQ=37)                                                                                                                                       cccGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCa                                                                      >  1:560153/1‑235 (MQ=39)                                                                                                                                          gCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGGGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGAc                                                                                    >  1:938/1‑218 (MQ=39)                                                                                                                                                               attCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCAt                                                                                                 <  2:938/183‑1 (MQ=39)                                                                                                                                                                             aGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCGAATGCCGAGGAAGCCCTGGGAGTGCTg                               >  1:175293/1‑236 (MQ=255)                                                                                                                                                                                      ccGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCggg                                                                                                                         >  2:70511/1‑137 (MQ=40)                                                                                                                                                                                      ccGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCgag                                                 >  2:445211/1‑209 (MQ=255)                                                                                                                                                                                       cGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGc                                                                                                                                          >  2:738144/1‑119 (MQ=40)                                                                                                                                                                                       cGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGc                                                                                                                                          <  1:738146/119‑1 (MQ=255)                                                                                                                                                                                           tCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTa                    <  2:560151/233‑1 (MQ=255)                                                                                                                                                                                                 ggCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGTGCTGGCCGGTCGCTTCCCTGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGaa               <  2:755756/232‑1 (MQ=255)                                                                                                                                                                                                           tCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGc  >  1:196518/1‑235 (MQ=255)                                                                                                                                                                                                           |                                                                                                                                                                                                                                           GAACGCACCTCCGCCCGCGGTCTGGAAATCTCACTGGCGTTGCTGATTCACCCAATGGGCCAGCCGACACCCGGCACAGAAGATCATGACCGGCGTTTCAAACGCCTGGAGCAATGGCTGGACCAGCACGACAGCCCGCTTTACACCGCCTTGGCGCCGTTCAACCCGTTCAAGGACAAAGCCGATTCGATCGGCACCTTGTTCGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGC  >  AE015451/4109460‑4109896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.